BAC Information

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BAC

Clone NameMSMg01-397F08
Chromosome3 (Build37)
Map Location 95,267,502 - 95,267,753
singlet/doubletsinglet
Overlap geneArnt
Upstream gene2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305
Downstream geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397F08.T7 (MSMg01no397_f08.b1)MSMg01-397F08.TJ (MSMg01no397_f08.g1)
ACCAG497698AG497699
length804805
length of high quality
(start - end)
345 (70 - 414)252 (78 - 329)
definitionCHROMAT_FILE: MSMg01no397_f08.b1 PHD_FILE: MSMg01no397_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:44 2005CHROMAT_FILE: MSMg01no397_f08.g1 PHD_FILE: MSMg01no397_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGACAATCCGCG
GAATTCCATGGTTTGCCGGTCCTGGGTTCTGTAAGAAAACAGGCTGAGCA
AGCCATGGGAAACAAGCCAGTTAGCAGCTCCTGCCCATGGCCTCTGCCTC
TAGGTTCCTGCCCCGTTTGAGTTCCTGTCCTGATGTCCTTCAGTGATGAA
CAGTAATGTGGAAGCAAGCTAAGCCCAATGAACCCTTTTCTCCCAAGCTG
CTTTTGGTTGTGGTGCTTTGCCATAGCAACAGAGACCCAAACTAAGACAC
TTGGTCTACATAGGAAGCGCCCATCAGCCAGGGTTAAAAGGTTGAGACCC
TGTCTCAAACCAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATACACCCCTCATTTTCTCTCCCCTTTCTCCCCCATCGT
TCTTCTCTTTTTTTCCTTTCTCATCCTTCTTTTTCTTTCTTCCTTCCTTT
TTTCTCTCTTTCCCTCCTCCTCTCTTTTTTCCTTTTCCTCTTCTTCTTTA
CTCCTCCCCCTTTCTCTTCTCTCCCCTTCCTTTTCTATCTCTTTTTACTT
CTTTAATCCTCCCTTTTTCACTTTTCTTTTTTTCTCCGCCACCCCCTTTC
CTCTCTCTCCCATTTTTCCTTTCTTTCCCCTCTCCCTCCCTCTTTCTCTT
TCCCCTCATCTTTTTCCTCCGCCTCTTTTCCACCCTTTACCATTCACTTC
TTCTGCGCCTAAATCTCTCTCCGTCTCTTCCTCTTCTTACTTCTCTCCTT
TCTN
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGACTAGAGAGA
GAAACTGTTTTGAAAAACAGAACAAAAGAAAAGTTATTTGGCTATGTAGT
TCAAGACCAGCGTTGGCTTCATGTGATCCTAAAAAACAAAGGTCAGATCA
TCATTAGGGCAGGTAATACAGGTCCAGTCCTCAGTCTTTGATCGAAACTC
TGGAAAGCCATAAAACACAACCTGGAGTATCTAATCTGCCTATGTCCTAT
TCTGTTTAGAAATATTGGAGTAGAGAGGGGGTTGTCCTTCCTCCCCCCCT
TCTTTTTCCCTCTCCTTCTCTCTTTCCCTTCCTTTTTTTCCCCTCTTTTT
TTTTCCCTCTCTTGCGCCCCCCCTCTCTTTTTTTCTCCCTTTTTTTCTCT
CTTTCTCCTCCCTCCTTCCTCTTTTTGTAACTACCCCCCCTCTCATTGCT
CCCTCCCTTTCTCTTCTCTCCTCATCCTCCCTTCGTCCCTCTTCTTCTCA
TTCTCCCCCCTTTCTTTTTTCTTTTTTTCCTCCCTTTTTTTTCCCCTTTC
TTCCGCTTCTTCCCCCTTTTTCTTTTTGTTTCGCTCTTCTCCCCCCTCTC
CCCCCACTCTTCTTTCCTCCTATTCTTCCCTTCTCCGTCCGTCCCTCCCG
ATTACCTGCTGTTTTTATCGCGATCGCGCCTCACACAGCTGTGGACTCAT
TTTTCCCCCACATCCCGTTATNCGCTTCTTATTTCTATTTCATCCGTCCC
CTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_f08.g1 MSMg01no397_f08.g1 CHROMAT_FILE:
MSMg01no397_f08.g1 PHD_FILE: MSMg01no397_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:44 2005
         (252 letters)



>mm_chr3_95267302_95267953
          Length = 652

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaggactagagagagaaactgttttgaaaaacagaacaaaagaaaagttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaggactagagagagaaactgttttgaaaaacagaacaaaagaaaagttat 260

                                                                       
Query: 61  ttggctatgtagttcaagaccagcgttggcttcatgtgatcctaaaaaacaaaggtcaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ttggctatgtagttcaagaccagcgttggcttcatgtgatcctaaaaaccaaaggtcaga 320

                                                                       
Query: 121 tcatcattagggcaggtaatacaggtccagtcctcagtctttgatcgaaactctggaaag 180
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tcatcattagggcagctaatacaggtccagtcctcagtctttgatcgacactctggaaag 380

                                                                       
Query: 181 ccataaaacacaacctggagtatctaatctgcctatgtcctattctgtttagaaatattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccataaaacacaacctggagtatctaatctgcctatgtcctattctgtttagaaatattg 440

                       
Query: 241 gagtagagaggg 252
           ||||||||||||
Sbjct: 441 gagtagagaggg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)