Query= MSMg01no397_l04.b1 MSMg01no397_l04.b1 CHROMAT_FILE:
MSMg01no397_l04.b1 PHD_FILE: MSMg01no397_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:13 2005
(446 letters)
>mm_chr3_83236966_83237811
Length = 846
Score = 822 bits (425), Expect = 0.0
Identities = 438/445 (98%), Gaps = 6/445 (1%)
Strand = Plus / Plus
Query: 5 gaattctggataatttcc---gtgagagtagatggaatattacaaaggttgcatgagagc 61
||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggataa---ccacagtgagagtagatggaatattacaaaggttgcatgagagc 261
Query: 62 atcctataaacccataagtcattacactcttgtttattaacactggtgaggggtctctga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcctataaacccataagtcattacactcttgtttattaacactggtgaggggtctctga 321
Query: 122 ctcatggaccccacaacttaagttggctgagagaaaaccatcaaacaacatatttttgtt 181
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctcatggaccccacaacttatgttggctgagagaaaaccatcaaacaacatatttttgtt 381
Query: 182 cctttttatattttacaacctacctactgcctagcacacagtagcactaaataaatattt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctttttatattttacaacctacctactgcctagcacacagtagcactaaataaatattt 441
Query: 242 ttattgaatgaataaaaaaatgcaataattgaaattaagagccccagctattattgtgat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttattgaatgaataaaaaaatgcaataattgaaattaagagccccagctattattgtgat 501
Query: 302 gccaggtaaggtaagccaaggagtggtgggctagaagagagatgagtagaaaactttcca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gccaggtaaggtaagccaaggagtggtgggctagaagagagatgagtagaaaactttcca 561
Query: 362 ggctgcagaagtgaccatgaaatataagcttgtggtttatgtccccatgaaatgtacagt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggctgcagaagtgaccatgaaatataagcttgtggtttatgtccccatgaaatgtacagt 621
Query: 422 ctagcaaagaagaggtgagtgacat 446
|||||||||||||||||||||||||
Sbjct: 622 ctagcaaagaagaggtgagtgacat 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_l04.g1 MSMg01no397_l04.g1 CHROMAT_FILE:
MSMg01no397_l04.g1 PHD_FILE: MSMg01no397_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:13 2005
(475 letters)
>mm_chr3_83392113_83392987
Length = 875
Score = 716 bits (370), Expect = 0.0
Identities = 370/370 (100%)
Strand = Plus / Minus
Query: 1 agtaggcatcaaaagagggacacattagcacattacatcatcttatatgcataaatattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agtaggcatcaaaagagggacacattagcacattacatcatcttatatgcataaatattc 311
Query: 61 acaatacacatttataatgcaaatactaatcaaaaatatcttaaataatgatgaaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaatacacatttataatgcaaatactaatcaaaaatatcttaaataatgatgaaaataa 251
Query: 121 gttttaataatttttctttagattcagaaacagtaacattgttgcgtctcatttttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gttttaataatttttctttagattcagaaacagtaacattgttgcgtctcatttttaaaa 191
Query: 181 tgtcactcaaactaagccaagtattttgtgtatagagtaaattttgtaattacaaacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgtcactcaaactaagccaagtattttgtgtatagagtaaattttgtaattacaaacaga 131
Query: 241 actgctgaattattccccatggtgctctgcatcaaggcttcaattttttaagaaaatgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 actgctgaattattccccatggtgctctgcatcaaggcttcaattttttaagaaaatgta 71
Query: 301 accattcaagtggtgacacaaaatgacaaaagcaatccaaaggtttcctaatttttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 accattcaagtggtgacacaaaatgacaaaagcaatccaaaggtttcctaatttttaaaa 11
Query: 361 gttgttatct 370
||||||||||
Sbjct: 10 gttgttatct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
