Query= MSMg01no397_p16.b1 MSMg01no397_p16.b1 CHROMAT_FILE:
MSMg01no397_p16.b1 PHD_FILE: MSMg01no397_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:35 2005
(457 letters)
>mm_chr3_153801268_153802124
Length = 857
Score = 785 bits (406), Expect = 0.0
Identities = 444/462 (96%), Gaps = 10/462 (2%)
Strand = Plus / Plus
Query: 1 tacactcctactgccctgagatgcagagatggaaacttgctgtgtcttctgacatttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacactcctactgccctgagatgcagagatggaaacttgctgtgtcttctgacatttact 260
Query: 61 tggaacccaaattcttaactagaagtttgtgtatggagtcacaaagttaaaatttattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaacccaaattcttaactagaagtttgtgtatggagtcacaaagttaaaatttattct 320
Query: 121 gtcagtaatctggaaataataaatgtgttcactatggaaataaatatgttaaataataat 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gtcagtaatctggaaataataaatgtgttcactatgggaataaatatgttaaataataat 380
Query: 181 taaattaattaattccacttattttgatgtagtaataaactaaaacttcacattgtaccc 240
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 taaattaattaatttcacttattttgatgtagtaataaactaaaactttacattgtaccc 440
Query: 241 gagaaacacttttta-----ttattatttatctgttaaaatcattacaattctaaaatat 295
||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaaacac-----acacaattattatttatctgttaaaatcattacaattctaaaatat 495
Query: 296 gattatatatgcatttctacctctgttatcaaagttcctttgttatctttcgcgcacttt 355
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 496 gattatatatgcatttctacctctgttatcaaagttcctttgttatcttttgtgcacttt 555
Query: 356 atctatctagagtctaaatgttgttctcacacttaaataccatttacaccttcaaatttt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atctatctagagtctaaatgttgttctcacacttaaataccatttacaccttcaaatttt 615
Query: 416 cttttcttaaacttcttaatttgctcccgtatgattcctcaa 457
||||||||||||||||||||||| |||| |||||||| ||||
Sbjct: 616 cttttcttaaacttcttaatttggtcccatatgattcttcaa 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_p16.g1 MSMg01no397_p16.g1 CHROMAT_FILE:
MSMg01no397_p16.g1 PHD_FILE: MSMg01no397_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:35 2005
(246 letters)
>mm_chr3_153918817_153919462
Length = 646
Score = 476 bits (246), Expect = e-139
Identities = 246/246 (100%)
Strand = Plus / Minus
Query: 1 tctcattttaaggaagagtgggtgccttccagtgccatgcgtgcctcctgcatgggattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctcattttaaggaagagtgggtgccttccagtgccatgcgtgcctcctgcatgggattc 387
Query: 61 cttatttcccttccctctttgactgaccgaaggttttgacagacagaccacagttctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttatttcccttccctctttgactgaccgaaggttttgacagacagaccacagttctgta 327
Query: 121 atttcttcctctgcttagtttcttagcttcccaaagcgagagaagacctgttggatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atttcttcctctgcttagtttcttagcttcccaaagcgagagaagacctgttggatcttc 267
Query: 181 tgttaaagtgtaagattcctttcctgattcagaaaaaccttctgtacttcagtcaaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgttaaagtgtaagattcctttcctgattcagaaaaaccttctgtacttcagtcaaaaca 207
Query: 241 taggac 246
||||||
Sbjct: 206 taggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
