BAC Information

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BAC

Clone NameMSMg01-398J07
Chromosome3 (Build37)
Map Location 41,008,133 - 41,008,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398J07.T7 (MSMg01no398_j07.b1)MSMg01-398J07.TJ (MSMg01no398_j07.g1)
ACCAG498649AG498650
length775792
length of high quality
(start - end)
166 (75 - 240)238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no398_j07.b1 PHD_FILE: MSMg01no398_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:21 2005CHROMAT_FILE: MSMg01no398_j07.g1 PHD_FILE: MSMg01no398_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCTCCCAGGTTCTTAAAGGAAACAAATTACAAGTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGGAAGA
CAGGAAAGTAATTTTTAAAAATCCTAGAAAATAAAATTGGGTAGCATATG
AACAAAATTATTGACAATGGCCAAGAGAGTGACATCTCAGCAACATAAAA
TAAATCTCTATAATCTATGTTAATAGAACTAAAGAACAAAAAACATATAC
TTGGTAATTTCAATTTTTGTTTTTATTTCATGATTAAAAATTCAGAAACT
TATGAATAATAGGAAGTGTCCTCGATGTGAGAAAAGGTATTTCTGAAAGA
TAGAAGTCTGACACCTTGCACTCAGTGGTGAGGCCTGTCAGGTCTCCCCT
CAGACAAAGGATGCGTGTGTTTTTTGTTGATTCTATTACTGCGTCAAAGT
TGTTAGGCATAGTTCCATTATTATACATAGCAATTTATATTTTACCATGC
TATTGAATATGATTTATGTTTTGCATTGCCTAGCTTTCTTAATTTTTTCT
TACCCCGTTCTTTTGACTTCTGAAACTTATTGGCCTACATCCAAAATTCT
CCTTTTTTTTTATAACTACCCCCCTATGGTTCACATTTTTTATTTTTACT
TTTTTTACGCTCCTTGTTTTTTCTTACCTATTCCCCCCATTTATATATGT
CTATTACTTCATCTCTATTTCTCGN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCGACATACATTCTTTTTAATGGTAGGAGTAACCGCAGTC
TTATTATCCTCATAAAGGAAGGTTTCAGTTGTGGCCGATGGACTCACCTT
AAATACACCGTCCTTCGGCGCAGACCGGTGCATTCACTTTTACCTTGCTT
TTTTTTTTTTTTTCTCACCCTTAAATATAACATTTTTCCATTTTGATTTA
TTATGCTAATGTTTGCTTGAAAGAAAACTGAAGGCTTGAGTTTGCATGCA
GGAAGACATTTTTGTTGTGTTTTTGAGAGGCACACTATAGACCAGATAGA
TTCTTATTATTTTCGAAAGAAAAAGATGAGCGAGGGAGATGGCTTATGTG
TGAAAGTGTCTCCCCCCCCTAAGTGTGATGATTGTATTTTGTTTCCTCTT
AATCCTCCTATTTCCCTGTTGTGCGTTTCTCCCTCTGTCTCCCCCTCCCG
TCGTCCCACGATATCTTTGTACTCTGCCTGCTCTATGTACCCTCCTTTGG
ACTTTATTGCATTACTCTCCCCTCCTCTCCTCTTCCTTCATTTCCCTTTC
TTCCTCTTTCTTTCTCTCTTTCTTTCTCTTTTTTTCCCCTTCGCTCGCTC
CTCTCTCATTCCCTATTTTTTATTTTTCCCGCCTCTGATCTTCCTTTTCA
ACCATTCCTAAATATTATTTCCTCCCTCCTCTTGTTATCCATATTAATTA
ATCCCCCACTTCCCACCACTTTTTATTCTTTCCTTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_j07.g1 MSMg01no398_j07.g1 CHROMAT_FILE:
MSMg01no398_j07.g1 PHD_FILE: MSMg01no398_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:21 2005
         (238 letters)



>mm_chr3_41007933_41008569
          Length = 637

 Score =  362 bits (187), Expect = e-104
 Identities = 226/239 (94%), Gaps = 3/239 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttttaatggtaggagtaaccgcagtcttattatcct-cataaaggaaggtttcagt 59
           |||||||||||| |||| |||||| |||||||||||| || || |||||||| |||||||
Sbjct: 437 ttctttttaatgttaggtgtaaccacagtcttattat-ctgcagaaaggaagctttcagt 379

                                                                       
Query: 60  tgtggccgatggactcaccttaaatacaccgtccttcggcgcagaccggtgcattcactt 119
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 378 tgtggccgatggactcaccttaaatacaccgtccttcagcacagaccggtgcattcactt 319

                                                                       
Query: 120 ttaccttgctttttttttttttttctcacccttaaatataacatttttccattttgattt 179
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaccttgc-ttttttttttttttctcacccttaaatataacatttttccattttgattt 260

                                                                      
Query: 180 attatgctaatgtttgcttgaaagaaaactgaaggcttgagtttgcatgcaggaagaca 238
           | ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 aatatgctaatgtttgcatgaaagaaaaccgaaggcttgagtttgcatgcaggaagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 637
Length adjustment: 9
Effective length of query: 229
Effective length of database: 628
Effective search space:   143812
Effective search space used:   143812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)