BAC Information

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BAC

Clone NameMSMg01-399N07
Chromosome3 (Build37)
Map Location 52,553,566 - 52,553,901
singlet/doubletsinglet
Overlap genenone
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762
Downstream geneLOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399N07.T7 (MSMg01no399_n07.b1)MSMg01-399N07.TJ (MSMg01no399_n07.g1)
ACCAG499599AG499600
length726940
length of high quality
(start - end)
336 (71 - 406)---
definitionCHROMAT_FILE: MSMg01no399_n07.b1 PHD_FILE: MSMg01no399_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:57 2005CHROMAT_FILE: MSMg01no399_n07.g1 PHD_FILE: MSMg01no399_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGACGGATCCGCGGA
ATTCTTAGTTACGAATACAGGTATAGATAAGAATTCTTCACTTTTAACTG
TCTCTTAAATCTGACTACACACAAATACATGCACATGCACACAACTATAA
CTGCAGCAAATAGTTATTTTGTCTTTGTTATATGTTAGGCTCTAAGTTAA
ATACATGAAGCTTCTCAGGTAAGCCTCACTATCTTATACATTTCTGATAA
CTAATTATAATTATTCATTTATTGTTGTTATCAATCTGTGGTTTTATTTA
TAATTTAGACCTTTCTTTATAAATTATCAATAATTTGTTTGTGATTGTTA
TTTATTTATAACTATCATAAATTTATATTTTTAGATAAAGACCCATCTAC
TTATATGGCACCCCCCACAAATGGNACCTAGTTAGGAGGCATTATAGCAG
AGACAAATCCAGTCATGGTTTGCCTCCTAAACAAATAAGATCAACTTCGA
CATCGCCTGTCTTATCCCTTGTGTTCATGACACATTAGCTCTCGGTACTA
CCGTTATTATTGCTGTGGTGCTCAGCTCATTATTATTACAATATTCTTCT
GCGGCTCCAGAGAAACTTGATTATTTCATAATCTAGCATCTTTTCACCTG
GCTACCTATAAACCCCTAGCCCTCCCTTTATTTTATTTTTTTCCCCACCC
CCCTCCCCCCCTCATTCTTGTTTCCG
TCTCACTCTTTTTCTCCTACTCGTCTCTCCTCGTCACTTCTCGCCCTATC
TCCTCTCTTTTTTTTTCGCATACATAGATACACCGGGGCGACACGCCCTC
AACTATACAACACCACAAACTACCGCCGGCGCCTATTCTCGCGCGGGCTG
GGTCATTGGTGGACTGGGTGGGGGTGCGAAACGCGTATTTTCAAGAGACA
AAGACGGGCGCGCGCGACAATTATACCATGTCCTACACGAGCTCTCTGCC
GTCGGCCTCATAGTTTTTGGTGTTTTAAACCCCAGACATAATTAATACCC
CCAGAAGAGAGAAGTATCCTNNTTTTCTTCCATACCGCAGAAAAAAGGGN
GTACAATAAGAGGGGGGGGGGCGCCTAATAGGGACCCCCGTGAGGTTGGT
GGNNNNCGGNCCCTGGTGTTTCCACAAAGAAAAATGTTTAGGGGTGCACA
ACCTCATTAGCAAATGTCACCCCGCCGAGAAAATTTCCTGTGGTCCCGGT
GGNATTCCTTTTGGGTAAAAAACATTGGGGCGGTCTGGAGGGGTCCAAGA
AACTAAAGAGGCCTCCCTCCAAGGGCTTTTGGGGAGAAATTATAGACCAT
GGGTGGAGCCCCCTAATATATAAAACCTGTGGGAACAAAGGGGGGGTCTA
TATTAAATATTTTCACACGATTTGTACTTCCCCCTCCACACTTTTTTCAC
TAGAGTGAGAGACGGAGGGGGGTGGACATATCCACCACGCTTGTGTGGGT
AACAGAGACGCCCACCGGCGGGGTATATTAAGCTTCGTCACTAGGAGCTT
CTTTAAAANNAACAACCCGCTAAATAAGAGCGGGTGGGGAGCTCCGTCGT
GGGTGTAGGGGCGGATCCTGCCGGCGGCCTTCCGCAAATCTTGCTGCCTT
GTACTATCCATATCATCTCCGCTCTCCCTGTGCATTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_n07.b1 MSMg01no399_n07.b1 CHROMAT_FILE:
MSMg01no399_n07.b1 PHD_FILE: MSMg01no399_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:57 2005
         (336 letters)



>mm_chr3_52553425_52554160
          Length = 736

 Score =  596 bits (308), Expect = e-175
 Identities = 329/336 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatagataagaattcttcacttttaactgtctcttaaatctgactacacacaaatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtatagataagaattcttcacttttaactgtctcttaaatctgactacacacaaatacat 418

                                                                       
Query: 61  gcacatgcacacaactataactgcagcaaatagttattttgtctttgttatatgttaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcacatgcacacaactataactgcagcaaatagttattttgtctttgttatatgttaggc 358

                                                                       
Query: 121 tctaagttaaatacatgaagcttctcaggtaagcctcactatcttatacatttctgataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctaagttaaatacatgaagcttctcaggtaagcctcactatcttatacatttctgataa 298

                                                                       
Query: 181 ctaattataattattcatttattgttgttatcaatctgtggttttatttataatttagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctaattataattattcatttattgttgttatcaatctgtggttttatttataatttagac 238

                                                                       
Query: 241 ctttctttataaattatcaataatttgtttgtgattgttatttatttataactatcataa 300
           |   |  |||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 237 caaacaatataaattatcaataatttgtttgtgattgttatttatttataattattataa 178

                                               
Query: 301 atttatatttttagataaagacccatctacttatat 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 177 atttatatttttagataaagacccatctacttatat 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)