BAC Information

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BAC

Clone NameMSMg01-400G10
Chromosome3 (Build37)
Map Location 110,056,944 - 110,057,093
singlet/doubletsinglet
Overlap genenone
Upstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400G10.T7 (MSMg01no400_g10.b1)MSMg01-400G10.TJ (MSMg01no400_g10.g1)
ACCAG500032AG500033
length898789
length of high quality
(start - end)
157 (49 - 205)251 (72 - 322)
definitionCHROMAT_FILE: MSMg01no400_g10.b1 PHD_FILE: MSMg01no400_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:42 2005CHROMAT_FILE: MSMg01no400_g10.g1 PHD_FILE: MSMg01no400_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCG
GAATTCTTTTCCAGATTCCGACTATTCCTGAGTATGTGACCCAGAAAAAA
TGTATTGGTATAAATGGGCAGTATATCTTGATACCACTGAGGAGTTAGAA
TTTCTGACATGAGATGAGATAGGAAGGGATGGGGTGGAAAAGAATGGGAA
GGNAAAGCCNGNANNTNNNNTTTTTTTTTTCTTATTTCTCTTCGCTCTAC
CTCCCGGTTTTTTTTTTTCTGTCCTCTTGTTTCGTCTTCTGTTCTGCGCG
CGCGACGCTGGCGCCCCCCGCTTTTTTTCTTTTCTCTTCTAACCCTTGTC
CACTTATATACTTTTCTCCTTCCCCCCCCGCGCCGCGCGGGCATTCTCAC
TCTGCTTTTTCTTTGTCCCCCCCCCGACTTTTTATTTACACCCTAATTCT
CTACTTTTACGTCAATCTCTCTTTATTTTTTCCCGCTCGCTCTTTTCTAC
GCTCTTAGTTATCCCTTCCTTAGGTCTTCTCCTTCCACTTTTCGCCTTGC
CCCTTTTGTCTTTTTTCTCGCCGCTCCTATTTTTTCTCAGCCCTCACTTC
TTTATTCTCTTTTTTCCCGCTTTTCATATACCTCCCCCACACCTTTCTAT
CCTTCTACTGACTCATACACGTCGTCCTCATCTTACTCTATTTCCTCATC
TATTGCCGCTTCCTCACCACCTTAACGTGTTGTTGTACTCTTTTACACCT
CCCACCTACATTATCTGTTATACTAACTTTCCCTCTACCACCTATCTATC
TCCTCTCGTCCTTTTTCTCTCCTTACTCGCTTTAATGCTGCGCATTCTCT
TTTTGCTTTTTCTCGTGTTCCCACTTTACTCCTTCTCCCCTGCTCACT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATAAGTATCACCACACAGGTTTAATTT
TGTGTCCAGCTTATTTGGGTTAGCATGTCATCTTTAAGACTTAGATATGA
TATGAATCTAAATTTGACCTTCATTTCATTTGAAAATGAATCATATTCTA
TTCTGTGTATATATTATATTTGTCTCCTCACCTTTAGGTGGAAGTCTTGG
CTGTTCCTGCCTTTAACTTTTTTGAATAATGCTGATGTGAACATTGGCAC
CTGTGTGTGGAAACCATCTTGTTATATTCGAAGCCATTTTAACTTTGAAT
TTGTTGGGCATATTCCCGTTTATTCCTTCTTTCTCTAAGCACTGAGATTG
TCTTATTGTTAGGAATACTTAAGCTAAAGGCAATCTGATCTACAGAATAA
TCCACAGAGTTCTGATGCCACATGGATAGCAACCAACTGACTACCTGTAC
TCTTAGAGTAGTTTTCAGTGTAGATTATTAAAAGAAAATTATTGAGCCTA
TATTATTATTTCCCAGGGAGTAAACTAAAGTGAGTGTACAGTAAAGAATA
ATTTGACCGGAAGGGACACTTCGATTTTAAATTCCTTATAAAAAAGGGGG
GTAACCAGGCCCTATCTTTTTTTCAAAATTAATACTCAATCCAACTAACT
TCAATAACAAAATTTTGTTGGGGGTGTCTTTCTAAAAACCATCTCTTGGC
CCTCAAGGGAATAAAATATAAATCTCTTCTTTTCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_g10.b1 MSMg01no400_g10.b1 CHROMAT_FILE:
MSMg01no400_g10.b1 PHD_FILE: MSMg01no400_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:42 2005
         (157 letters)



>mm_chr3_110056786_110057340
          Length = 555

 Score =  253 bits (131), Expect = 3e-72
 Identities = 147/153 (96%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcttttccag-attccgactattcctgagtatgtgacccagaaaaaatgtattggt 61
           |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 308 gaattcttttccagaatt-cgactattcctgagtatgtgacccagaaaagatgtattggt 250

                                                                       
Query: 62  ataaatgggcagtatatcttgataccactgaggagttagaatttctgacatgagatgaga 121
           |||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||
Sbjct: 249 ataaatgggcagtatatcttgatacca--gaggagttagaatttctgacatgaggtgaga 192

                                            
Query: 122 taggaagggatggggtggaaaagaatgggaagg 154
           |||||||||||||||||||||||||||||||||
Sbjct: 191 taggaagggatggggtggaaaagaatgggaagg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 555
Length adjustment: 8
Effective length of query: 149
Effective length of database: 547
Effective search space:    81503
Effective search space used:    81503
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)