Query= MSMg01no400_l04.b1 MSMg01no400_l04.b1 CHROMAT_FILE:
MSMg01no400_l04.b1 PHD_FILE: MSMg01no400_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:05 2005
(504 letters)
>mm_chr3_5346358_5347261
Length = 904
Score = 909 bits (470), Expect = 0.0
Identities = 483/492 (98%), Gaps = 8/492 (1%)
Strand = Plus / Minus
Query: 21 actctttcttatctgcaaattttcgtaaaatttcaatactagctttctattatataaaaa 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 actctttcttatctgcaaattttcgtaaaatttcaatactagctttctattatataaaaa 845
Query: 81 tgaaaacacattattagtagtagaaattactgataacattttaaaggactgaaacgcatg 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tgaaaacacattattagtagtagaaattactgataacattttaaaggactgaaacgcatg 785
Query: 141 caaagatccattatataaactaatcttatacactcatgcacgtgtgcatg--------ca 192
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 784 caaagatccattatataaactaatcttatacactcatgcacgtgtgcatgcacacacaca 725
Query: 193 cacacacacacacacacacaattcccaaaaattcccaagtcatactaactgaaacattta 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cacacacacacacacacacaattcccaaaaattcccaagtcatactaactgaaacattta 665
Query: 253 ataaaaccaaaaggcttgtaataaaatacctcttctagttacatcacattcacactgacc 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ataaaaccaaaaggcttgtaataaaatacctcttctagttacatcacattcacactgacc 605
Query: 313 acagtattgagcctaaattcccagcagcgtcattacgagacattttttgccacctttctg 372
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 604 acagtattgagcctaaattcccagcagcatcattacgagacattttttgccacctttctg 545
Query: 373 aatctgaaaagcttcctacatttagtgaagattaggtaatgctgcatgcaatcaatagca 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aatctgaaaagcttcctacatttagtgaagattaggtaatgctgcatgcaatcaatagca 485
Query: 433 gctatcaattctgtgccttgttcagcagaacatattgattaaagtaaggaagagggctca 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gctatcaattctgtgccttgttcagcagaacatattgattaaagtaaggaagagggctca 425
Query: 493 ctaaatattgct 504
||||||||||||
Sbjct: 424 ctaaatattgct 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_l04.g1 MSMg01no400_l04.g1 CHROMAT_FILE:
MSMg01no400_l04.g1 PHD_FILE: MSMg01no400_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:06 2005
(506 letters)
>mm_chr3_5159498_5160403
Length = 906
Score = 942 bits (487), Expect = 0.0
Identities = 501/506 (99%)
Strand = Plus / Plus
Query: 1 tgatattatctatggtattttatctcaatgttcactcgaaaaatattagcaattcatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatattatctatggtattttatctcaatgttcactcgaaaaatattagcaattcatttt 260
Query: 61 taatgtgaagtaaatatgcaatttaaaataaagtgtttaaaataaaattaaacattaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgtgaagtaaatatgcaatttaaaataaagtgtttaaaataaaattaaacattaacc 320
Query: 121 attatatttgtttcatttttgttgtatttcgttcatattacctattccttgaaattttat 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatgtttgtttcatttttgttgtatttcgttcatattacctattccttgaaattttat 380
Query: 181 tccatgaacatgttttattaatgatctattaataagtgttcacttaaacatgtctgatta 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatgagcatgttttattaatgatctattaataagtgttcacttaaacatgtctgatta 440
Query: 241 aaaagtatacttaattttaagtaagttatatgaaaatgttcatttattgaattcattgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagtatacttaattttaagtaagttatatgaaaatgttcatttattgaattcattgaa 500
Query: 301 atttaagttctcatttgtatagctagggggtggattacagatgtgtgtgcttgttttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttaagttctcatttgtatagctagggggtggattacagatgtgtgtgcttgttttatt 560
Query: 361 actataatgaacaggacttgtatgtctaacactaattaaaattctgctctgatccatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actataatgaacaggacttgtatgtctaacactaattaaaattctgctctgatccatata 620
Query: 421 gctgaggcctctcccccaaatgaattgtttttaaatctttatattanatttattatacgt 480
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 621 gctgaggcctcgcccccaaatgaattgtttttaaatctttatattaaatttattatacat 680
Query: 481 gttcatgataatgaaagtatttattt 506
||||||||||||||||||||||||||
Sbjct: 681 gttcatgataatgaaagtatttattt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
