BAC Information

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BAC

Clone NameMSMg01-401A08
Chromosome3 (Build37)
Map Location 79,813,269 - 79,813,475
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401A08.T7 (MSMg01no401_a08.b1)MSMg01-401A08.TJ (MSMg01no401_a08.g1)
ACCAG500505AG500506
length752809
length of high quality
(start - end)
638 (53 - 690)210 (80 - 289)
definitionCHROMAT_FILE: MSMg01no401_a08.b1 PHD_FILE: MSMg01no401_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:32 2005CHROMAT_FILE: MSMg01no401_a08.g1 PHD_FILE: MSMg01no401_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGAG
GCGCGGAATTCAAGGCCTTTCTCTAAACATAGTAAAAGCAATATACAGCA
AACCAGTAGTCAACATCAAACTAAATGGAGAGAAACTTGAAGCAATCACA
CTAAAGTCAGAGACAAGACAAGGCTGCCTACTTTCTTCCTACCTATTCAA
TATAGTAGTCGAAATTCTAGTTAAAGCAATTAGACAACAAAGAGAGGTCA
AAGAGATACAAATTGAAAAGGAAGAAGTCAAAATATCCCTATCTGCCAAT
GATATGATTTTATACTTAACTGACCCTCTTAAATTCCACCAGAAAACTCC
TAAACCTGATAAACAACTTCAGCAAAGTGGCTGGATATAAAATTAACTCA
AACAAATCAGTAGCCTTCCTCTACTCAAAGGATAAACGGGGTGAGAAAGA
AATTAGGGAAACAACACCCTTCACAATAGTTGCAAGTAATATTACACATC
TTGATGTGACTCTAACCAGCAAGTGAAAGATCTGTATGACAAGAACTTCA
AGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTC
CCATGCTCATGGATTGGCGGGATTAATTAGTAAAAATGGCCATTTTACCA
AAAGCAATCTACAGATTCAATACAATCCCCATCAAAATTCCAAATCAATT
CTTCATAGAGTTAGAAAAAGCAATTTGCAAATTCATCTGGAATAACAAAA
AN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTCTGATTGTTAAATAT
GTGGAAGGAAGTGTGGATAGAGACCAGGAAATTAGAAGGGTTCAAGAAAA
AGCAAAATAGCTTTAAAGGACTGGGGTGAAGAGTCCAATGGGATGTGTAC
GATATGAAATTAGCTGAGACAATGCTGAGGAAAAGGGCTATGGCTGAGAG
AGGAGATAGGGGGGTGGGGAGGAAATGGAGGATATCCNTCNNNNTNTGAN
TTNNNNGGNCNNNNNGNNNCCTGTTTTTTTTTTTCCGANGGNGTAACGAA
AGAAAACACAATATCTTTTTCCCTCCCCAAATGATAATATGACGTCTCAT
AATCTTTTCCTATCTCACACGGTAACCCTCGTTTACAGGTATTTCTGACA
CCTATGGACTCACCCCCCACACCATTGATCTCTTTCTCCTCTCCCCAACT
TAATACCCCCTAATTTTGTCTAACACCTCTCGTCGCTTGTTCTGTCGATC
AACTCCTCTTTGCTTTACCGCGACGCCCTCATCTTTTCCTTACTCCTTTC
TTTCTTCAGGTCCCCCCTTCTTCTACTTTTCTCACGCACCCCCTCCCCCT
CCCCCCCCCCTATTCCCTCTTTCTCCCCTTCCCCCTATTCTTTTCCTTCT
CCCCCCCCCCCCTCTAGCTCTCCTCCCCTATTTTCTTCTCCCTCTTCATG
GTTCTCCCCCTCCTTTTCTCCTTTTTTCTCTTCACCCCTCTCTTTCTCTA
TCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_a08.g1 MSMg01no401_a08.g1 CHROMAT_FILE:
MSMg01no401_a08.g1 PHD_FILE: MSMg01no401_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:32 2005
         (210 letters)



>mm_chr3_79813069_79813677
          Length = 609

 Score =  387 bits (200), Expect = e-112
 Identities = 206/208 (99%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtttctgattgttaaatatgtggaaggaagtgtggatagagaccaggaaattagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtttctgattgttaaatatgtggaaggaagtgtggatagagaccaggaaattagaagg 260

                                                                       
Query: 61  gttcaagaaaaagcaaaatagctttaaaggactggggtgaagagtccaatgggatgtgta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gttcaagaaaaagcaaaatagctttaaaggactggggtgaagagtccaataggatgtgta 320

                                                                       
Query: 121 cgatatgaaattagctgagacaatgctgaggaaaagggctatggctgagagaggagatag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cgatatgaaattagctgagacaatgctgaggaaaagggctatggctgagagaggagat-g 379

                                       
Query: 181 gggggtggggaggaaatggaggatatcc 208
           ||||||||||||||||||||||||||||
Sbjct: 380 gggggtggggaggaaatggaggatatcc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 609
Length adjustment: 9
Effective length of query: 201
Effective length of database: 600
Effective search space:   120600
Effective search space used:   120600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)