BAC Information

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BAC

Clone NameMSMg01-401A15
Chromosome3 (Build37)
Map Location 121,086,087 - 121,086,628
singlet/doubletsinglet
Overlap genenone
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1
Downstream geneCnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401A15.T7 (MSMg01no401_a15.b1)MSMg01-401A15.TJ (MSMg01no401_a15.g1)
ACCAG500518AG500519
length1,266757
length of high quality
(start - end)
---542 (80 - 621)
definitionCHROMAT_FILE: MSMg01no401_a15.b1 PHD_FILE: MSMg01no401_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:33 2005CHROMAT_FILE: MSMg01no401_a15.g1 PHD_FILE: MSMg01no401_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGTTTGTTCCTTACNNCTGTCACNNNNNNNNNNNNNNNNNNNNNNNTTT
GCGNAGGAAAGAGGGGNNGNGNNGNAANNGNGNNGGNNGGTTAACCANTT
TCATCTGCAGTNTGGGGGGGGGGNGGGGNNGGGGGNNNGGGAGGNGCGGG
GAAGNGGANGAAAGGNGGTGTGTTTTATCCCACGAAAACGAAGAGCCCAT
GCGCGTGACGTGAGCTNGACTATATCCTATATGATTCTCTTCCCACCGCA
ATGTGGCGGAGGGGCGCGTCAGCTGGTCAAATGGACTTCTCGCAGCATCG
CACCTCTTCTCGCGGTTTCTCTCTACGCCATCTCATTGCCCACGCATTCT
CTCTCATAGGGAACAGAGCACTCGCTTGCAATAAGCCCATTTCCTCCTGG
TGACGCTTCGCATTCTTACTCGAACGTCACACCATACAGTCTTTCTATCA
CAGGCATGCTCTACATCCCGTATATATATTTTACGGGCGCTGCGCTCCCA
ATCTCATTTCTTATTGAGATTACTCTGACTGGCAATGGATANCCTGTTCG
CGTATGCCACTTCCTATACAACATGATATTGTCTTCTCTCTCCCTCTCAC
CCTCAGCGCACGACTTTGCCTGTCAGTAGCAAATCTTGGCTCTCCTCCAC
GACTATCCACCCCCGGTTCAGTCGAGACTCGACGAGCACATCATATACTA
TACATCATAAGAATAATACCTCCCGTGACGCGTGATCGCTCTCCGCACCA
ATCATACTCCTCGACCTACTGTATGTCTCCTTGACNACTAAGCGAGTAAT
AGTACGCGTCCTTCCACGACTCCGCTCCCGGATCACTACTTGTGTAATGA
TTTCTAGACCGCGATTAGCATGTCTCTAGTTAGATGGAACTAGAACATGT
CCACACTCTACGTATGTGTGAGANATAACGACGTCCACTCTCTAAATACT
ACTTGACGTCAATCTAGACCGCTGTGTTGTGCTATATCATATTTTGCACT
CGATTGCAGTCATTGTTCCTGCTTTATGGCTCGCGAGATGTGTATAATAC
CGTTCATATTATCTCTCATTATTACGGCGCATTTTATAGTTCTCATCACG
AATGATTTTTACTTACATTCGCTCACTCAGTTACGCACNTATTTTGTGCT
CACCATTGTTGTGGAACTAGTCGTAGTGCAGCCTTGTGTACTCACCATCA
CCGCCTCTTATCTCTATGTNTATCTATCCCTCTGCGCTGTCTCGTCCTCG
CACGTTCTCTATCCCG
TTTCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAATACTCCATGCCTCCT
GTCTGTTATTAGAGGTATAAACAACTCTTCCTTTAATTTGAGACTGCCTT
TAGCAAGAATGCCTAGAGGAATTCTTGAAGAACCAGGTTTTACCTTTCTC
CCCAGAAAAAAACAGTGGGACAAACAGCCACGTGTCTTTAGTGAGCAACC
TGTACATTCCGCCTACCAACAAGGCGAGAGTGATCCTGTTGGAGCCACAG
AAGGCACCGAATTCTTCAGAGCATCTTTGACTGTGTGAAAAAGCCTTGAC
TCGGTATCAGTGGAAACAATTCTCATTAATGTTGCCTAACATTTTTGTAG
ATGAATGTTGACAAAATTAAAGACTCTGAGGGCTGCTGAATAAATCTGGG
GTTGCCTAAGATCTGGAATAGGCAGACATTATTATACACAACACCTTCCT
GGTGTGAAAAGGAAATAAGGCAGTTTACAGTGGAAGGATTTCCTTGCTTT
CCCCCTCCTCCTCAGGAGAGGGGTACAATCAGTGTTTATTTAATCAAATG
TGTTAACTTTTTAAAAAATAAATTCACTGTATTATAAATATAAATTCATT
TATTGCATGTATAAATCCCGCTTTAAGAGTTTTTGGAGTCACAATGTGTG
TTGAGCACTTTTTAAGCCTCTCCCCTTGACATTGGAAAAAAAAGTTTTTT
CTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_a15.g1 MSMg01no401_a15.g1 CHROMAT_FILE:
MSMg01no401_a15.g1 PHD_FILE: MSMg01no401_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:34 2005
         (542 letters)



>mm_chr3_121085887_121086828
          Length = 942

 Score = 1017 bits (526), Expect = 0.0
 Identities = 538/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaatactccatgcctcctgtctgttattagaggtataaacaactcttcctttaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaatactccatgcctcctgtctgttattagaggtataaacaactcttcctttaattt 260

                                                                       
Query: 61  gagactgcctttagcaagaatgcctagaggaattcttgaagaaccaggttttacctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagactgcctttagcaagaatgcctagaggaattcttgaagaaccaggttttacctttct 320

                                                                       
Query: 121 ccccagaaaaaaacagtgggacaaacagccacgtgtctttagtgagcaacctgtacattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccagaaaaaaacagtgggacaaacagccacgtgtctttagtgagcaacctgtacattc 380

                                                                       
Query: 181 cgcctaccaacaaggcgagagtgatcctgttggagccacagaaggcaccgaattcttcag 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcctaccaacaaggcgagagcgatcctgttggagccacagaaggcaccgaattcttcag 440

                                                                       
Query: 241 agcatctttgactgtgtgaaaaagccttgactcggtatcagtggaaacaattctcattaa 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatcaatgactgtgtgaaaaagccttgactcggtatcagtggaaacaattctcattaa 500

                                                                       
Query: 301 tgttgcctaacatttttgtagatgaatgttgacaaaattaaagactctgagggctgctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttgcctaacatttttgtagatgaatgttgacaaaattaaagactctgagggctgctga 560

                                                                       
Query: 361 ataaatctggggttgcctaagatctggaataggcagacattattatacacaacaccttcc 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 ataaatctggggttgcctaagatctggaataggcagacgttattatacacaacaccttcc 620

                                                                       
Query: 421 tggtgtgaaaaggaaataaggcagtttacagtggaaggatttccttgctttccccctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgtgaaaaggaaataaggcagtttacagtggaaggatttccttgctttccccctcct 680

                                                                       
Query: 481 cctcaggagaggggtacaatcagtgtttatttaatcaaatgtgttaactttttaaaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcaggagaggggtacaatcagtgtttatttaatcaaatgtgttaactttttaaaaaat 740

             
Query: 541 aa 542
           ||
Sbjct: 741 aa 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)