BAC Information

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BAC

Clone NameMSMg01-401B12
Chromosome3 (Build37)
Map Location 120,471,105 - 120,471,430
singlet/doubletsinglet
Overlap genenone
Upstream genePtbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401B12.T7 (MSMg01no401_b12.b1)MSMg01-401B12.TJ (MSMg01no401_b12.g1)
ACCAG500560AG500561
length847743
length of high quality
(start - end)
34 (194 - 227)327 (322 - 648)
definitionCHROMAT_FILE: MSMg01no401_b12.b1 PHD_FILE: MSMg01no401_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:38 2005CHROMAT_FILE: MSMg01no401_b12.g1 PHD_FILE: MSMg01no401_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCCATAATTGGGCCCGGNAAAAGAAGCACTATTTCATACCAGTGCGCG
GAANNCCCCGTTCGCACAAACCCCCGGNNNNAANGNGGNNATNTGANTTT
CTGAAGTCCACCTTCTTGACCTCTTTATATATGTTGTATATTAGTCCCCT
ATCTGATTTATGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGATGGTGTCTTTTGCCTCGCAGAAACTTTGGAGCTTCTTT
ATTTCCCATTTGTCACTTCTCCGACCTACAGAGCAAGCCATTGCCTGCTC
TGCTCAGGACAATGTTTTCCTGATTTTCAGACACGCCCAGGCTTTTTCCC
CACTCTTCTCCTTCTTTTATTTCTCACCTGCCCTCTGCGCTTTATGTGTA
AGTTCCCTTGATTCCACTTTAGACTTTGACCTTTACTACCATGTCGACAT
AGTATGCGATTCGATTCGTATCCTTTCTACTCTGATATACTATCACCTTG
TGTTCTGTACCCTCTCGTCCGACACATGTTTGCCCTCCCCCCCTCCTGTA
TTGGTCTTCCTCCTCCTCCTGCCTTCATACTTTTCTCGCACCACTAGCTC
GCTGTGCTTTCTTCTTTTCTTGGCTTCTTCCTACACTTATTCTCTATCCG
CTTCCTCCCCTGCATTGATTTTCCCACACTTTGTTACTTTCGCTACGCTT
TTCTAATCACCACCCTCGTTCTCTTTTTTCTTTTTCTCTTTCCAGACGTC
TCCCTCCTTGCCTGGAACCCTCATCCCTTTATGCGTCCCTCCTCTCTCCC
TTCTCACCGATAATTTTTCCCGCCTCCTCTCCTATCCTACTCTTTTN
TCCGATGATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACCGACAAATTCCTCAAAACAGAGATGGGATACCAGCAA
TAGCGGTTACAGCATAATATTGCATTTACTTTTCCAACTCACTTCATTCC
ATCTGACCTTCTCTTCCAGCTGTCAATCCCTGTGGCTCCTCCCTTTCACC
CTACTCCAGATTTTCTCTCACATGCGGTCATAGCCAACCTTTCTCTTAAT
GTATCCCTTGCCCTAAGCAATGTCCGATAGGTTCTCAGCTCTCTGTGAAT
GTATTTGGAATAGTTCACTGNTTTTGGGATAATCTCCTACCCGGAATATG
CACTGTCATCTTTGTGAACCTTCTGAAAGCCCATTTCCACTGGGAGCCTC
CTTATGTTAATTTCCCTGCCAGGCACATTAGAGAGTCCTCATTCCTAGGA
CTGCTGTCCTAGCCAAATCCGAGTCGCCAGCACTTTAAGAGAGAGATGCC
ATTTCTGTTTCTTTTAAAGCACTGTGTCTGACTCTCAAAATAATGTCTTC
CATCAAAATAATATCCCTTAACTGGATGTCAGAGCCTATGGCCCAAGCCA
GGGGCCCGATCTGCCAAGTCAGCTTCAATTGTTCCTTCTGGTAAATTTCT
TTCTATGTTTTCTAGAAGTTCTAGGGCTAAAAGCCCCCAGAAGGTGATAA
ACAAAGGGAGATATTTCCCCTAATAACATGATGAGACAAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_b12.g1 MSMg01no401_b12.g1 CHROMAT_FILE:
MSMg01no401_b12.g1 PHD_FILE: MSMg01no401_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:38 2005
         (327 letters)



>mm_chr3_120470904_120471630
          Length = 727

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tttgggataatctcctacccggaatatgcactgtcatctttgtgaaccttctgaaagccc 61
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttgggataatctcctacccagaatatgcactgtcatctttgtgaaccttctgaaagccc 261

                                                                       
Query: 62  atttccactgggagcctccttatgttaatttccctgccaggcacattagagagtcctcat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atttccactgggagcctccttatgttaatttccctgccaggcacattagagagtcctcat 321

                                                                       
Query: 122 tcctaggactgctgtcctagccaaatccgagtcgccagcactttaagagagagatgccat 181
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 322 tcctaggactgctgtcctagccaaatccgagttgccagcactttaagagagagatgccat 381

                                                                       
Query: 182 ttctgtttcttttaaagcactgtgtctgactctcaaaataatgtcttccatcaaaataat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttctgtttcttttaaagcactgtgtctgactctcaaaataatgtcttccatcaaaataat 441

                                                                       
Query: 242 atcccttaactggatgtcagagcctatggcccaagccaggggcccgatctgccaagtcag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atcccttaactggatgtcagagcctatggcccaagccaggggcccgatctgccaagtcag 501

                                     
Query: 302 cttcaattgttccttctggtaaattt 327
           ||||||||||||||||||||||||||
Sbjct: 502 cttcaattgttccttctggtaaattt 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)