BAC Information

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BAC

Clone NameMSMg01-401C08
Chromosome3 (Build37)
Map Location 13,780,372 - 14,004,041
singlet/doubletdoublet
Overlap gene0710005M24Rik
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401C08.T7 (MSMg01no401_c08.b1)MSMg01-401C08.TJ (MSMg01no401_c08.g1)
ACCAG500600AG500601
length744743
length of high quality
(start - end)		613 (51 - 663)529 (79 - 607)
definitionCHROMAT_FILE: MSMg01no401_c08.b1 PHD_FILE: MSMg01no401_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:42 2005CHROMAT_FILE: MSMg01no401_c08.g1 PHD_FILE: MSMg01no401_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,780,372 - 13,780,980)(14,003,513 - 14,004,041)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCAAGTTTCTTCTTATGGAGATGGAGAAAGAGTTGATCATGC
TAAACCTTAACAAAGTGGTTTGATATTGGTTAATAGAGATGGGAAAGAGT
CAAGAATAAGCCCCACATTTTTGATCTGATTCTGTGTTGGATAATCTTGC
ATGTCCGTGGGATGAGAGGACTTTTCAGAGGAAAAATGTTTTGGTATAAA
ACTGTGAGTTCAGGACTGAGCATTTTTTATTAAGGATAACTGACTTAAGC
ATACAGGCATATATCTAATACTAACATCTTACAAATATGGCACCCATGGT
AAGTGAGAGTTTTAAACAAAGGATATTAAGTATGAGTCATGGACATAAAC
TGTGCTAAGGAATGAATAAATCCCCTTGTGGAGGGTATGGAATAGGAAAA
GTGTTCCATAAGTTTGAGTTCCATAAGGTAGAGAAATATTTGGTTTCCTA
GAAAGAAATTTTCTAATAAACACAATAAACACCCTGCAAAGACTAGAATC
AAATTAGTTTTCTGGATTTGTATGCATGCACTTTCTGAAACTTTGTTTCT
GAATTTGTCCAAGCCCTGTAGCCAATTGTCAACTAANATTCACTGTACCA
TGATCCTTCCACATGCCCCTGTCAATCTCCATGCTAACTGACTTCCTTAC
TCTGCTAGGCTGTTCTACTTTCCAGACTGGATAGCTGCTTGATC

NNNNTCAATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGCAAAATGACCTTTTGAT
TCTGCAGAAAGTATAGAGTGAAAACACTTCTCTATTTCTCTATTGCCTTG
TCAGGCAATCACTGTCTTATTTCAGAACTCTGTTAACTGAAGGCTTTAAA
ATACTTTTTAAAGAAATAATATATTCATCCTGAAGCCTATTTGTCTAAGT
TAGCCCATAAAATAACTATCAAAAATGCTTTGAAAATAATCAAATACATC
CTTAAACTAAAATATACCATGACAATTTTTTATTCCCTTGAGATATCCAG
TAAATAGCCAAGGGAAATGACTCTATCAGACAATAGAAAAAGAACAACGA
GATTGACTAATGCCATGCTTCATGTTAGTGATGTCACTTGTACAGTGAGG
AGTACTAATGGCTGATTCCTGTGACTATCCATTTCAGGGGTCCACAGTGC
CCTAGCTATGTCCACATTCTTAATTTTAACTCTGTCTGTCTATGTACTCT
TCCCTGACAAAAGGCTGATGGGTCTGAAAGGCAGCCTATCTTTCTGTATC
CATGTACTTAGACCAGCATGTGATTCATGATCCCCGAAATACCCGATTGC
CCTTGGGGAGTGTTCTGTTGTACTCCAATTTTTGTACTTTTAGTTCTTGG
GATATATTGAGATCATTGACCTGTAATAATGGCCTCCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_c08.b1 MSMg01no401_c08.b1 CHROMAT_FILE:
MSMg01no401_c08.b1 PHD_FILE: MSMg01no401_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:42 2005
         (613 letters)



>mm_chr3_13780168_13781180
          Length = 1013

 Score = 1118 bits (578), Expect = 0.0
 Identities = 601/609 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtttcttcttatggagatggagaaagagttgatcatgctaaaccttaacaaa 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcaagtttcaaattatggagatggagaaagagttgatcatgctaaaccttaacgaa 264

                                                                       
Query: 65  gtggtttgatattggttaatagagatgggaaagagtcaagaataagccccacatttttga 124
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgggttgatattggttaataaagatgggaaagagtcaagaataagccccacatttttga 324

                                                                       
Query: 125 tctgattctgtgttggataatcttgcatgtccgtgggatgagaggacttttcagaggaaa 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgattctctgttggataatcttgcatgtccgtgggatgagaggacttttcagaggaaa 384

                                                                       
Query: 185 aatgttttggtataaaactgtgagttcaggactgagcattttttattaaggataactgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgttttggtataaaactgtgagttcaggactgagcattttttattaaggataactgac 444

                                                                       
Query: 245 ttaagcatacaggcatatatctaatactaacatcttacaaatatggcacccatggtaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaagcatacaggcatatatctaatactaacatcttacaaatatggcacccatggtaagt 504

                                                                       
Query: 305 gagagttttaaacaaaggatattaagtatgagtcatggacataaactgtgctaaggaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagagttttaaacaaaggatattaagtatgagtcatggacataaactgtgctaaggaatg 564

                                                                       
Query: 365 aataaatccccttgtggagggtatggaataggaaaagtgttccataagtttgagttccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aataaatccccttgtggagggtatggaataggaaaagtgttccataagtttgagttccat 624

                                                                       
Query: 425 aaggtagagaaatatttggtttcctagaaagaaattttctaataaacacaataaacaccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaggtagagaaatatttggtttcctagaaagaaattttctaataaacacaataaacaccc 684

                                                                       
Query: 485 tgcaaagactagaatcaaattagttttctggatttgtatgcatgcactttctgaaacttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcaaagactagaatcaaattagttttctggatttgtatgcatgcactttctgaaacttt 744

                                                                       
Query: 545 gtttctgaatttgtccaagccctgtagccaattgtcaactaanattcactgtaccatgat 604
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 gtttctgaatttgtccaagccctgtagccaattgtcaactaaaattcactgtaccatgat 804

                    
Query: 605 ccttccaca 613
           |||||||||
Sbjct: 805 ccttccaca 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_c08.g1 MSMg01no401_c08.g1 CHROMAT_FILE:
MSMg01no401_c08.g1 PHD_FILE: MSMg01no401_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:42 2005
         (529 letters)



>mm_chr3_14003313_14004241
          Length = 929

 Score = 1007 bits (521), Expect = 0.0
 Identities = 527/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatagcaaaatgaccttttgattctgcagaaagtatagagtgaaaacacttctctatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aatagcaaaatgaccttttgattctgcagaaagtatagagtgaaaacacttctctatttc 670

                                                                       
Query: 61  tctattgccttgtcaggcaatcactgtcttatttcagaactctgttaactgaaggcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tctattgccttgtcaggcaatcactgtcttatttcagaactctgttaactgaaggcttta 610

                                                                       
Query: 121 aaatactttttaaagaaataatatattcatcctgaagcctatttgtctaagttagcccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaatactttttaaagaaataatatattcatcctgaagcctatttgtctaagttagcccat 550

                                                                       
Query: 181 aaaataactatcaaaaatgctttgaaaataatcaaatacatccttaaactaaaatatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaataactatcaaaaatgctttgaaaataatcaaatacatccttaaactaaaatatacc 490

                                                                       
Query: 241 atgacaattttttattcccttgagatatccagtaaatagccaagggaaatgactctatca 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atgacaataatttattcccttgagatatccagtaaatagccaagggaaatgactctatca 430

                                                                       
Query: 301 gacaatagaaaaagaacaacgagattgactaatgccatgcttcatgttagtgatgtcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gacaatagaaaaagaacaacgagattgactaatgccatgcttcatgttagtgatgtcact 370

                                                                       
Query: 361 tgtacagtgaggagtactaatggctgattcctgtgactatccatttcaggggtccacagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtacagtgaggagtactaatggctgattcctgtgactatccatttcaggggtccacagt 310

                                                                       
Query: 421 gccctagctatgtccacattcttaattttaactctgtctgtctatgtactcttccctgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gccctagctatgtccacattcttaattttaactctgtctgtctatgtactcttccctgac 250

                                                            
Query: 481 aaaaggctgatgggtctgaaaggcagcctatctttctgtatccatgtac 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaaggctgatgggtctgaaaggcagcctatctttctgtatccatgtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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