BAC Information

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BAC

Clone NameMSMg01-401I01
Chromosome3 (Build37)
Map Location 24,576,760 - 24,577,109
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneEG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401I01.T7 (MSMg01no401_i01.b1)MSMg01-401I01.TJ (MSMg01no401_i01.g1)
ACCAG500873AG500874
length744732
length of high quality
(start - end)
---350 (190 - 539)
definitionCHROMAT_FILE: MSMg01no401_i01.b1 PHD_FILE: MSMg01no401_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005CHROMAT_FILE: MSMg01no401_i01.g1 PHD_FILE: MSMg01no401_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTCAAAATTTGCGGCCGCTAAACGAGCACTAAATGCAGAGAAGCCG
CGGAANNCCANATTTTTTCTGAACACTGGGAAGACAACCAGCAAACCTTC
AGCCATAAAATTTGCCACTATTAACACTACATATTCATAATTTATGAGCC
TGTAACAGCACATTGTAACTGAGATGATCTAATCTCCAGTCATATGATGC
TTTTAGGCCGATTTATTTATGATGGAATAGATTCACTCCTTCTATGACAG
GTCATTTTATAGTTTTTATGAATCATAGTGTCATTCGGATAAAATTAAGA
AATTCCATTGATTTCCTCATATTTAATTATTTGCGCACCAAGCTCAACAC
ACCTATACCACTGTTTATATCTCCCTCCCCCTTCCTATCCTTAGTATTAT
CATACACCATGTAGATATGTGAAACAATCTTAAATCTGTTCTGCATTACA
AACGAACTTTGAATATTATCTCAAAGCATCCTATTCGTACCATGAAAATC
TGTAAAGATTGATATTATCTTTATATCAGCTTTACCGATAATGACTCTCT
CGTAGAGCCAGTATAGCATGCTTCATTGTTTAAAGCACCTTACTCGCTGT
TCTAACGTCTCGATTTTGAGCTCCTCCGCATCTAAACTGTATTCCTTCCC
TAATAACCGCGCATTCTTTGTTTTTTTACTTCTACTTCCTTTTTTTTTGT
CCCTCACCCTTTGTTTTTTTCCCTATTTTCCCCTCCCTTTTAAC
TCCTCCCCTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCATAAATA
CAGTTACTTTGATTGGCCTATCTTTAGTCTTCACACACAACGGCCTAGAT
AAGATGGTATTTATACTGGCCACAGTTGAAGGGAAACATTTAATCCAGGT
GAGCATGGCAGGAAGTTGGAGTTTGACTATCTGATTTGCCTTGTGGCTAG
GACTTCAGTCCATATGGAGGCCTGTAGGACTTCTTTCCATGGAATTTTTC
GGTGTTGATTCTCCTCATACAATTATTACTGTCACCAGTCATTGGTAGAC
AAATCTAATGATAGAAGTAGAAAAACCATTTCAGCTTGGGGGAGCTATGG
AGTCATTCACAGAAGATGGAGCACAGAAGCCTGTGTGGTGGTGCGCTGTC
TGCTTCCTGGCTCTGTGCTATGTCACCATCCCTATATTAAGGAAGGACAG
ATGGTAACCTCATGCTACCATCACTTCTGAAGGAAACTGGTAAATAGTTT
CTTTTTAAAGGGCAACTAATTCATTAATACCAAACTGACTGTCAGGAAAA
TGTTTCTACAATTATTCACATCCCCAAATTTTTAAAAGTGAAGTCTATTT
TAAAGCTCTAAGCACCTATATTTTCTCTCTTAACATTTGAAAAATCCTCC
GCAATTCTGTAAAACTTATGCATTCTGCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_i01.g1 MSMg01no401_i01.g1 CHROMAT_FILE:
MSMg01no401_i01.g1 PHD_FILE: MSMg01no401_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:08 2005
         (350 letters)



>mm_chr3_24576560_24577309
          Length = 750

 Score =  615 bits (318), Expect = e-180
 Identities = 342/350 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatccaggtgagcatggcaggaagttggagtttgactatctgatttgccttgtggcta 60
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ttaatccaggtgagcatggtaggaagttggagtttggctatctgatttgccttgtggcta 260

                                                                       
Query: 61  ggacttcagtccatatggaggcctgtaggacttctttccatggaatttttcggtgttgat 120
           |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 261 ggacttcagtccatatggaggcctgtaggacttcattctatgggatttttcggtgttgat 320

                                                                       
Query: 121 tctcctcatacaattattactgtcaccagtcattggtagacaaatctaatgatagaagta 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctcatacaattattactgtcaccagtcattggtagacaaatctaatgatagaagta 380

                                                                       
Query: 181 gaaaaaccatttcagcttgggggagctatggagtcattcacagaagatggagcacagaag 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gaaaaaccatttcagcttgggggagctatggagtcattcacagaggatggagcacagaag 440

                                                                       
Query: 241 cctgtgtggtggtgcgctgtctgcttcctggctctgtgctatgtcaccatccctatatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgtgtggtggtgcgctgtctgcttcctggctctgtgctatgtcaccatccctatatta 500

                                                             
Query: 301 aggaaggacagatggtaacctcatgctaccatcacttctgaaggaaactg 350
           ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 aggaaggacagatggtaacctcacgctaccatcacttctgaaggaaactg 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)