Query= MSMg01no401_i04.b1 MSMg01no401_i04.b1 CHROMAT_FILE:
MSMg01no401_i04.b1 PHD_FILE: MSMg01no401_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:09 2005
(329 letters)
>mm_chr3_73718789_73719517
Length = 729
Score = 516 bits (267), Expect = e-151
Identities = 308/333 (92%), Gaps = 22/333 (6%)
Strand = Plus / Minus
Query: 1 acatttctaatgtgaacaaaatagtcagataaaccaattttacaccgttgttg--gt--t 56
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 727 acatttctaatgtgaacaaaatagtcagataaaccaattttacaccgttgttgttgttgt 668
Query: 57 tttttttttaaaactagggaatataaggcttttaattcttcagaataattaattaaaatg 116
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ttttttttt--aactagggaatataaggcttttaattcttcagaataattaattaaaatg 610
Query: 117 tatcatgagccccagcagtcttttaatattttaagtactattattaaaacaatgcatcat 176
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgtcatgagccccagcagtcttttaatattttaagtactattattaaaacaatgcatcat 550
Query: 177 attgtttgtttgtttgtttgtttgtttgttttttgtcaaggtaaaattttattctcacca 236
||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 549 attgtttgt---------------ttt-ttttttgtcaaggtaaaattttattctcacca 506
Query: 237 accacctgtaaatagtgtttacctttaacctactttgtcattttctacagaattaacaag 296
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 accacctgtaaatggtgtttacctttaacctactttgtcattttctacagaattaacagg 446
Query: 297 cactatgactctaggcttctttttgttttagag 329
|||||||||||||||||||||||||||||||||
Sbjct: 445 cactatgactctaggcttctttttgttttagag 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_i04.g1 MSMg01no401_i04.g1 CHROMAT_FILE:
MSMg01no401_i04.g1 PHD_FILE: MSMg01no401_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:09 2005
(297 letters)
>mm_chr3_73534076_73534772
Length = 697
Score = 565 bits (292), Expect = e-165
Identities = 295/296 (99%)
Strand = Plus / Plus
Query: 1 aatatcctttggaacttcttgagtcggttagcttcttttcaaatttatttccaggcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aatatcctttggaacttcttgagtcggttagcttcttttcaaatttatttcaaggcattc 260
Query: 61 tagaacgggaacaaaaattctatttcaaaaaacatagcataaggctgctcttatgcagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaacgggaacaaaaattctatttcaaaaaacatagcataaggctgctcttatgcagta 320
Query: 121 cataaattgttcagaagtattgtttttgataaatagtgcgtgttgatgttaggacaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataaattgttcagaagtattgtttttgataaatagtgcgtgttgatgttaggacaaata 380
Query: 181 caaaattgctttggacagaaaattgatcctctcatccaagctgttaccaaagtggattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaattgctttggacagaaaattgatcctctcatccaagctgttaccaaagtggattgc 440
Query: 241 ttgctgcaaagagggttttgcttgaaaaaccccagcttattgggaaaggcacttta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctgcaaagagggttttgcttgaaaaaccccagcttattgggaaaggcacttta 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
