BAC Information

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BAC

Clone NameMSMg01-402K20
Chromosome3 (Build37)
Map Location 81,549,116 - 81,746,519
singlet/doubletdoublet
Overlap geneLOC100041901, Ctso
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneTdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402K20.T7 (MSMg01no402_k20.b1)MSMg01-402K20.TJ (MSMg01no402_k20.g1)
ACCAG501768AG501769
length732738
length of high quality
(start - end)
292 (50 - 341)233 (81 - 313)
definitionCHROMAT_FILE: MSMg01no402_k20.b1 PHD_FILE: MSMg01no402_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:39 2005CHROMAT_FILE: MSMg01no402_k20.g1 PHD_FILE: MSMg01no402_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,549,116 - 81,549,403)(81,746,287 - 81,746,519)
sequence
NNNAAATCTGTCCTCCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCATTTTCTCTGTGATGAAATCAAAAATAGCACGTGAGCC
TTCACAGAACTAGGCCCATGTCCCAATCACCTATCCCTGAGGCTGCTTAG
AAACAGCTGTGGGCTTAGTACATTTTATTGCCTTGCTCTGGCCTCAAAAC
TGTTCAGATGATAAATAATTTAGAAAAGCAAAAATAATAGCATATTGTTT
CTATATATATATTTGTAAACAAGAAAATTCAAAGACCAACAAACACATCA
TTATATTTGTAATGTACATGTTTTGATTGTGTAATGATTGACTTAANTTT
ATTTTTTCTAACGGTTCCTGACTTTTAATAAAATTAATAAAATTTCTTTT
TCAGAAACTTTAAAAGGTGGTTAAACTCTTCTGAGAATGTTCTTACATTG
AAACATGCACCTCTTTCTTATTTTTAAAGTATTATGTCATATATTGCCAA
ATATTTACCATGTATGTATAAATATTTAGGGAAATATAAGTAATATAACA
TTTGCTAAGATAGGTACAGCTAATACAAATTTTTTATTTCCAAACCTAGT
GAACCCCAAAAAAATATCCTTTGGAAAGAAGTTCTCAATAGAACTAAGGG
AATCAGACTGGAGAGATGGCTCAGGGGGCTGGTGCTTGCCACGGGGCTGG
GCAACTTGTGGTCTTAGTCTAAGATCCACATG
TTCCGCGATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTTTGCATAGTAGTATG
GCTACTGGGATATATCCTTGAGGTGTACATGCAGCGAGGGCAATGGTCAT
AGATAAGTAAGCACACCCAGGCAGGTTTAAAAGTCAGAATTACATCACTA
TCTCTCCTCTCTCACGGAGCCTTCTTTTCTGTTTTGTATTACTCAGGTGT
GATTCTATGTAGAAAAAAATCACGGGTTCTTTGATTTGACCATTAGGTAC
CTTCTAATGCTTAGACAACAAAGAGTAAAATGCTGTCATGCTTACCATCT
CCTGGTTCCTTACAGGAATTTCTAAAAAGTTTTGGGTCCCCCCCGTCTAA
ACCTCAATGGGTTAAAAAAACTATGTGGGAAAAGGGTCCCCGGCCCCCTT
TGCCGGGCTATTTGGTCAGTCCCGGCATATTTTGCTGCCCTAAATACAAA
TCTGGACAGAAGGAGGAAGACATCATGGAGAAAGTTATTAGATGAAGGGC
TACTCTGGGGACTTGCTTTTGGAATATCTTGTGAAGCAAAGCAGTCACTA
CCTAGCCAACCTGTCACATGAGATTTTTCCCCCGTGCTTTTCTGTAAAAG
GAAAAGCATTTTACTGTAAGCTAGGAATTGCAATTTTCTCCACGGGAACG
GATCTGTAGTAACATGACTTGGTTGATAGAATTGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_k20.b1 MSMg01no402_k20.b1 CHROMAT_FILE:
MSMg01no402_k20.b1 PHD_FILE: MSMg01no402_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:39 2005
         (292 letters)



>mm_chr3_81548912_81549603
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcattttctctgtgatgaaatcaaaaatagcacgtgagccttcacagaactag 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcattctctctgtgatgaaatcaaaaatagcacgtgagccttcacagaactag 264

                                                                       
Query: 65  gcccatgtcccaatcacctatccctgaggctgcttagaaacagctgtgggcttagtacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcccatgtcccaatcacctatccctgaggctgcttagaaacagctgtgggcttagtacat 324

                                                                       
Query: 125 tttattgccttgctctggcctcaaaactgttcagatgataaataatttagaaaagcaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttattgccttgctctggcctcaaaactgttcagatgataaataatttagaaaagcaaaa 384

                                                                       
Query: 185 ataatagcatattgtttctatatatatatttgtaaacaagaaaattcaaagaccaacaaa 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatagcatattatttctatatatatatttgtaaacaagaaaattcaaagaccaacaaa 444

                                                           
Query: 245 cacatcattatatttgtaatgtacatgttttgattgtgtaatgattga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacatcattatatttgtaatgtacatgttttgattgtgtaatgattga 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no402_k20.g1 MSMg01no402_k20.g1 CHROMAT_FILE:
MSMg01no402_k20.g1 PHD_FILE: MSMg01no402_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:40 2005
         (233 letters)



>mm_chr3_81746087_81746719
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtttgcatagtagtatggctactgggatatatccttgaggtgtacatgcagcgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctggtttgcatagtagtatggctactgggatatatccttgaggtgtacatgcagcgaggg 374

                                                                       
Query: 61  caatggtcatagataagtaagcacacccaggcaggtttaaaagtcagaattacatcacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caatggtcatagataagtaagcacacccaggcaggtttaaaagtcagaattacatcacta 314

                                                                       
Query: 121 tctctcctctctcacggagccttcttttctgttttgtattactcaggtgtgattctatgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 313 tctctcctctctcacggagccttcttttctgttttgtattactcaggtgtaattctatgt 254

                                                                
Query: 181 agaaaaaaatcacgggttctttgatttgaccattaggtaccttctaatgctta 233
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 253 agaaaaaaatcacgggttccttgatttgaccattaggtaccttctaatgctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)