BAC Information

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BAC

Clone NameMSMg01-403C02
Chromosome3 (Build37)
Map Location 118,512,133 - 118,696,174
singlet/doubletdoublet
Overlap geneDpyd
Upstream geneSnx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403C02.T7 (MSMg01no403_c02.b1)MSMg01-403C02.TJ (MSMg01no403_c02.g1)
ACCAG502114AG502115
length734732
length of high quality
(start - end)
619 (45 - 663)529 (77 - 605)
definitionCHROMAT_FILE: MSMg01no403_c02.b1 PHD_FILE: MSMg01no403_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:18 2005CHROMAT_FILE: MSMg01no403_c02.g1 PHD_FILE: MSMg01no403_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,512,133 - 118,512,743)(118,695,646 - 118,696,174)
sequence
CGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGGATATTTGATGGGCTCCACTAACATCTCTTGCCATCCTTCCT
GCATACTGGATATGATATGCTGATTCAGTCTGGTTTCTGATATTTCAATG
CTGTCTTCCCAGCTGTGATAGCTTTTCAGCTCCTATTTCACAGACCAGAG
ATACAGTTGGGGATTACTTAACTGACAAGTGTAACAATTTCAATTATATG
TTTGGAGAAGAGGAGAATGATCACCGACAGGGTCAGTGTCTCTAATGGTC
CACTGGGATACAGACTTTAGTCAGGCTCCATTTTACCTTTCGTATAGGTC
CCTACTTTGTGTCTCCAGGTATCAATGTCAATAAAGATCATGTGCCTAAT
AGCCCTTGAAATGCCTGATTATCCCTATTTCCCTTGTGCACAGTTGCCTG
GGTAAATGGCCCTCATTCCCTATGGGGAACCAGGGTAATTATTGTAGTAT
TTATTTGCCAGGGTACTGCAGTGTTCCACCTAGGAGCATGGTGTCTTTCT
TGCTCAGCAGGTTTCCACTAGGGGGAAAATCCAATTCATGGGTCAAAGAG
ATGGCTCTGTGGTCAGTGGCACTAACCACTGAACCTGACAGTCTGAGTAC
TATCCCCTGACCCCTCATGGTCAAGGAGAGAACTGACTTTTGAAAGTTGT
CCTCCATATATGTGACACCCTCCTCCAGNTTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGAGATGCCTATAGGATCCTTA
CTTAGCTGCACATGCACAAAACATTTATGAATGTATATAGTTGGCTAACA
TAGAGAACACAGATTTCAGAAATAAAAGGTTTTAATCAATTATTCATTCT
CAACTTCTTTGCTTGTTCAAAACACACAACAGGAAAATGAAAATAAAGGA
AAACAAAAGACCAAAGTCATACAGGACTCTGGTGCGGGAGTCAAAAATGA
GACTGGGGTTGGGGGGTGGAGCAAATACCAAGCCCTGAACCTGCAGTGTA
GACAGAAGGGTGAACATGGCTCTTTCAGAAGCAATTGCTAAACATTTGAG
ACACTGAAACTTAGAGGGATGCCCAAGTTTTTAAACTTTATTTTTCCTGA
GAATTTATTTTGAGAACCAAGCAAAGATTTTAGTCAAAATAAGTACAACT
TCCAAAGCTTGACTCGAAAACAGAGATTAGAAGAGTCCTTAAATTTATAT
AGGTTCTAATTCAAATTTCTCATTTTATTTCCATCTACAAAATTTGGCAA
ATCCTGTTACAACTCATATGACTTCCAAGTGTCACAGATCTTAATTTCAA
TCTGAATCGCCCACCCCACCCCCACTGTTCCTCTACCACGTTCTTTTGCT
CCAAGAGATAGGACCATTCTCTCCGGCGTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_c02.b1 MSMg01no403_c02.b1 CHROMAT_FILE:
MSMg01no403_c02.b1 PHD_FILE: MSMg01no403_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:18 2005
         (619 letters)



>mm_chr3_118511929_118512947
          Length = 1019

 Score = 1127 bits (583), Expect = 0.0
 Identities = 604/611 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatggatatttgatgggctccactaacatctcttgccatccttcctgcatactg 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatggagatttgatgggctccactaacatctcttgccatccttcctgcatactg 264

                                                                       
Query: 65  gatatgatatgctgattcagtctggtttctgatatttcaatgctgtcttcccagctgtga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatatgatatgctgattcagtctggtttctgatatttcaatgctgtcttcccagctgtga 324

                                                                       
Query: 125 tagcttttcagctcctatttcacagaccagagatacagttggggattacttaactgacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagcttttcagctcctatttcacagaccagagatacagttggggattacttaactgacaa 384

                                                                       
Query: 185 gtgtaacaatttcaattatatgtttggagaagaggagaatgatcaccgacagggtcagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtaacaatttcaattatatgtttggagaagaggagaatgatcaccgacagggtcagtg 444

                                                                       
Query: 245 tctctaatggtccactgggatacagactttagtcaggctccattttacctttcgtatagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctctaatggtccactgggatacagactttagtcaggctccattttacctttcgtatagg 504

                                                                       
Query: 305 tccctactttgtgtctccaggtatcaatgtcaataaagatcatgtgcctaatagcccttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccctactttgtgtctccaggtatcaatgtcaataaagatcatgtgcctaatagcccttg 564

                                                                       
Query: 365 aaatgcctgattatccctatttcccttgtgcacagttgcctgggtaaatggccctcattc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatgcctgattatccctatttcccttgtgcacagttgcctgggtaaatggccctcattc 624

                                                                       
Query: 425 cctatggggaaccagggtaattattgtagtatttatttgccagggtactgcagtgttcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 625 cctatggggaaccagggtaattattgtagtatttatttgccagggtactgcagagttcta 684

                                                                       
Query: 485 cctaggagcatggtgtctttcttgctcagcaggtttccactagggggaaaatccaattca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 685 cctaggagcatggtgtctttcttgctcagcaggtttccactagggggaaaaaccgattca 744

                                                                       
Query: 545 tgggtcaaagagatggctctgtggtcagtggcactaaccactgaacctgacagtctgagt 604
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 tgggtcaaagagatggctctgtggtcagtggcacttaccactgaacctgacagtctgagt 804

                      
Query: 605 actatcccctg 615
            ||||||||||
Sbjct: 805 cctatcccctg 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_c02.g1 MSMg01no403_c02.g1 CHROMAT_FILE:
MSMg01no403_c02.g1 PHD_FILE: MSMg01no403_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:18 2005
         (529 letters)



>mm_chr3_118695446_118696374
          Length = 929

 Score =  984 bits (509), Expect = 0.0
 Identities = 524/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgagatgcctataggatccttacttagctgcacatgcacaaaacatttatgaatgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 catgagatgcctataggatccttacttagctgcacatgcacaaaacatttatgaatgtat 670

                                                                       
Query: 61  atagttggctaacatagagaacacagatttcagaaataaaaggttttaatcaattattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atagttggctaacatagagaacacagatttcagaaataaaaggttttaatcaattattca 610

                                                                       
Query: 121 ttctcaacttctttgcttgttcaaaacacacaacaggaaaatgaaaataaaggaaaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttctcaacttctttgcttgttcaaaacacacaacaggaaaatgaaaataaaggaaaacaa 550

                                                                       
Query: 181 aagaccaaagtcatacaggactctggtgcgggagtcaaaaatgagactggggttgggggg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 549 aagaccaaagtcatacaggactctggtgcgggagtcaaaaatgagactggggttggggag 490

                                                                       
Query: 241 tggagcaaataccaagccctgaacctgcagtgtagacagaagggtgaacatggctctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 489 tggagcaaataccaagccctgaacctgcagtgtagacagaagggtaaacatgactctttc 430

                                                                       
Query: 301 agaagcaattgctaaacatttgagacactgaaacttagagggatgcccaagtttttaaac 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agaagccattgctaaacatttgagacactgaaacttagagggatgcccaagtttttaaac 370

                                                                       
Query: 361 tttatttttcctgagaatttattttgagaaccaagcaaagattttagtcaaaataagtac 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 369 tttatttttcctgagaatttattttgagaaccaagcaaggattttagtcaaaataagtac 310

                                                                       
Query: 421 aacttccaaagcttgactcgaaaacagagattagaagagtccttaaatttatataggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aacttccaaagcttgactcgaaaacagagattagaagagtccttaaatttatataggttc 250

                                                            
Query: 481 taattcaaatttctcattttatttccatctacaaaatttggcaaatcct 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taattcaaatttctcattttatttccatctacaaaatttggcaaatcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)