BAC Information

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BAC

Clone NameMSMg01-403D09
Chromosome3 (Build37)
Map Location 7,008,018 - 7,008,548
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403D09.T7 (MSMg01no403_d09.b1)MSMg01-403D09.TJ (MSMg01no403_d09.g1)
ACCAG502174AG502175
length757743
length of high quality
(start - end)
575 (43 - 617)532 (71 - 602)
definitionCHROMAT_FILE: MSMg01no403_d09.b1 PHD_FILE: MSMg01no403_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:25 2005CHROMAT_FILE: MSMg01no403_d09.g1 PHD_FILE: MSMg01no403_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAGTATAGCAATTTAGTGAGAAGCAATGAGAGAAGCCAATTTGAATC
AGTTAGCTTGGAGAAGTGTTTGAGCCATAACATCTGAGTTAAACCAGCTA
TCCAGAGTTTAGAAAGAAATGGAAGAGGTAAGCTTATTCATTAGTAAGCC
TCCAAGATAAGAATTATATCTGAGGAAATAAAAGTGAAATTTAACATCAC
AGAAGAAAATTTTTGAACAGAACATCAATAGCTCAGGCTCTAAGACTGAC
AATTTATAAATGGGACCAAATGAGCTGCAAAGCTTCTGCAAGGCAAAGGA
AACTGTTAAGAAGACAAAATAGCAGTCTACAGAATGGGAAAATATTTTCA
CTACCTCTACATATGACAGACAGTTAATAACCAAAATACAGAAAAACCTG
AGAAACTATACATCAACAATCTACACATCTAATTTGAAAACTGGGCTAAG
GATCCATACTGGCTGGTCTTGTGTGTCAACTTGACACAAGTTGGAGTTAT
CACAGAGAAAGAAGCGTCCCTTGAGGAAATGTCTCCATGAGATCCAGCTA
TAAGACATTTTCTCAATTAGTGATCAAGGATGGGAGGGCCCATTGTCAGT
GGTGCCATCCCTGGGCTGGTGGTCCTGAGTTCTATTGAAAAGCAAGTCGG
CCTATAAAATGAGCTCGGATAAAAGTGGGACAGAACTTGTGGGAGAGGGC
AAACAAG
TATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCTTATCTGGATTCAATTTTAGAAAAAT
TTGGCAATTGCCCTATAGCCAGTCAGTCAGCCAAATAAACAGATCCACTG
AAAAGAGCTTGTATAACATTTCTTGCAGCAGACAGAGTGGTCTGCATGTC
ATCTGTGTGCATCTGGCTGAGCGAAGCCTGTCTTCCAGATCTGTGCACAC
GGCAGTGTATAAATCTCTGTAACATGCAGATTCCAGCCAGAGGGCCCCGA
AGATGCAAGATATATAATCTGTTGACAACTTTTAGCCAAAGGAAACTGGA
ATTAAATAAGAACAAAATAAACAATGCCAGATAGACTTTTGTAGGGTTGA
AAAGCACTTTAATGAATTTCCTGTTCCAAGGAAGGACTAGAGAGACACAG
AGAGTGTCCGAAAGACAGCCAGAGTGGTCCTAATACTGAGAAGAGCAATT
TATGTGCTATAAAAGGAAAAAAAATCCTGACTGTAATTCGTCCTAAATCT
GATGACAGTTAAGATAATCCCAATGCCTAGCATTGACTCTATCACTTTGG
TCTTAGTAAATTAAAAAATTAAGATGATAAACGTAAGGTATTTTGTCCTT
TGTGAACAAGAATTTTTTTAAGAAAAGTTACAATTGCAGATTCCATTATA
TGACGGGCATTTTGCACAAACCAGAAGGTTAACCTAAACCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_d09.g1 MSMg01no403_d09.g1 CHROMAT_FILE:
MSMg01no403_d09.g1 PHD_FILE: MSMg01no403_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:25 2005
         (532 letters)



>mm_chr3_7007818_7008748
          Length = 931

 Score =  990 bits (512), Expect = 0.0
 Identities = 527/532 (99%), Gaps = 1/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcttatctggattcaattttagaaaaatttggcaattgccctatagccagtcagtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcttatctggattcaattttagaaaaatttggcaattgccctatagccagtcagtcag 260

                                                                       
Query: 61  ccaaataaacagatccactgaaaagagcttgtataacatttcttgcagcagacagagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaataaacagatccactgaaaagagcttgtataacatttcttgcagcagacagagtgg 320

                                                                       
Query: 121 tctgcatgtcatctgtgtgcatctggctgagcgaagcctgtcttccagatctgtgcacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgcatgtcatctgtgtgcatctggctgagcgaagcctgtcttccagatctgtgcacac 380

                                                                       
Query: 181 ggcagtgtataaatctctgtaacatgcagattccagccagagggccccgaagatgcaaga 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ggcagtgtataaatctctgtaacatgcagattctagccagagggccccgaagatgcaaga 440

                                                                       
Query: 241 tatataatctgttgacaacttttagccaaaggaaactggaattaaataagaacaaaataa 300
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gacataatctgttgacaacttttagccaaaggaaactggaattaaataagaacaaaacaa 500

                                                                       
Query: 301 acaatgccagatagacttttgtagggttgaaaagcactttaatgaatttcctgttccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatgccagatagacttttgtagggttgaaaagcactttaatgaatttcctgttccaag 560

                                                                       
Query: 361 gaaggactagagagacacagagagtgtccgaaagacagccagagtggtcctaatactgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggactagagagacacagagagtgtccgaaagacagccagagtggtcctaatactgag 620

                                                                       
Query: 421 aagagcaatttatgtgctataaaaggaaaaaaaatcctgactgtaattcgtcctaaatct 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 aagagcaatttatgtgctataaaaggaaaaaaa-tcctgactgtaattcgtcctaaatct 679

                                                               
Query: 481 gatgacagttaagataatcccaatgcctagcattgactctatcactttggtc 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatgacagttaagataatcccaatgcctagcattgactctatcactttggtc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 931
Length adjustment: 10
Effective length of query: 522
Effective length of database: 921
Effective search space:   480762
Effective search space used:   480762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)