BAC Information

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BAC

Clone NameMSMg01-403P17
Chromosome3 (Build37)
Map Location 115,313,431 - 115,442,988
singlet/doubletdoublet
Overlap geneEdg1
Upstream geneOlfm3, EG546808
Downstream geneDph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403P17.T7 (MSMg01no403_p17.b1)MSMg01-403P17.TJ (MSMg01no403_p17.g1)
ACCAG502763AG502764
length777797
length of high quality
(start - end)
381 (65 - 445)205 (70 - 274)
definitionCHROMAT_FILE: MSMg01no403_p17.b1 PHD_FILE: MSMg01no403_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:28 2005CHROMAT_FILE: MSMg01no403_p17.g1 PHD_FILE: MSMg01no403_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,313,431 - 115,313,574)(115,442,784 - 115,442,988)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCANA
TAATCTTCCAATTCACAAACTTAAGATATCAGGGAAGTTGAAAAGAACCA
TTTGAATTGAAATATAAAACCCAACCTATAGTGCAAGATCTCAGGAAATC
TATGAAAAACAATTTCTATTCAATCTGTGCTGGAAATAGGCATATGAAAG
GTTAACTGGCCCTTCCGCTCGACTCGAGCCCCGGGCTACCTTGCCAGCAG
AGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCCACGGGATCC
TAAGACCTCTGGTGATTATAACACAGCGCCTGCCCCAATCCAATCGCGCG
GAACCTGAGACTGCGGTACATAGGGAAGCAGGCTACCCAGGCCTGATCTG
GGGCACAAGCCCCTTCAGTTCCACTCGAGCCCCGGGCTACCTTGTCAGCA
GAGTCTTGCCCAACACTCGCAAGGGCCCACCCGTTATTCCTCACCGCATC
CTAATACCTCTGTCGAGTGGATTATAACTTTCCGCTCCCATTCTATCGCC
TGTTTACTGTATACCGTCCGTCCCATGTTCTTTCGCCTTCCCGTCTCTTA
TTCCCCTTTATATTCTTTTCCCCTCCTTTTCCACCCCCCTGTCCATTATT
TTCCCTTTTTTTTTTTTCCTATCCTTCGTTCCTTTCTTTTCCCTTTTCTT
TCCTTTTCTCTCCCCCTCTCCTTTTTCCTCCTCTTTTTTTCCCTCCTTCT
CCCTTCCTTTCCCCCTTTTTTCCATCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTCATGCCCATGGGGCAGGAGGAAGGGCT
TCAGTCTTGCCAAAGGCTGGTGTTCCTGGAATCCAAAGCAACTTAAAAAG
TAAGTTTGAGGACAATGACAGTGATAGGCTTCTATGACTTCATCCCAGGC
AAAGGGGACACATAGATGCAGACTGAAGACATAGATGCAGTCCTTCATCC
TGCTTGCCTGGACCTACGTGAGGCGCCAGTATCACTTATCAAAAGCCACC
TGCTACTGCCAGTGTCCTTTATCTCTTCTATACGCCACTCAAGTGTAGGA
TCTTTTGCCAGGCAACAGGTGTTATGACTCACCGTACCATGCCTTTATTG
ACCTTTATTTTTTTTCTACCTTTCTGTCTCCATTCTTGTTGCTGCTTTAT
TGCCCTCCCTTCGTTTCCTCTTCTTCTCCCTTTCCTTCTCTTTTTTCCAT
TTCTTTTACTATTCCCCCCTTTCCCCCTTTTCTTTCTTTTTTTTTCCCCC
CCTTCTTTTTCCTCTCTCTCTTTCCCCCCTATCCCCTTCATCCCTTTTTC
CTTTTTTCCCTCCCCCTTCCTTTTTTCTCCCTTCCCCTCTCCTTCCCCTT
CTCCTCTTCCTCCATCTTTCCCTTTCTTATCATTTTCCTTTCTCCCCCCC
CCCCCTTTTCTTTTCCCCCCCCTTCCCTTCCCCTCCTCTCCTCTCCTTTC
TTCCCCCTCTCTTTCCACCTCTTCACTTCTTCCATCCCCTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_p17.b1 MSMg01no403_p17.b1 CHROMAT_FILE:
MSMg01no403_p17.b1 PHD_FILE: MSMg01no403_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:28 2005
         (381 letters)



>mm_chr3_115313231_115314011
          Length = 781

 Score =  279 bits (144), Expect = 3e-79
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaacttaagatatcagggaagttgaaaagaaccatttgaattgaaatataaaacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaacttaagatatcagggaagttgaaaagaaccatttgaattgaaatataaaacccaa 260

                                                                       
Query: 61  cctatagtgcaagatctcaggaaatctatgaaaaacaatttctattcaatctgtgctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctatagtgcaagatctcaggaaatctatgaaaaacaatttctattcaatctgtgctgga 320

                                   
Query: 121 aataggcatatgaaaggttaactg 144
           ||||||||||||||||||||||||
Sbjct: 321 aataggcatatgaaaggttaactg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_p17.g1 MSMg01no403_p17.g1 CHROMAT_FILE:
MSMg01no403_p17.g1 PHD_FILE: MSMg01no403_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:28 2005
         (205 letters)



>mm_chr3_115442584_115443188
          Length = 605

 Score =  397 bits (205), Expect = e-115
 Identities = 205/205 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcatgcccatggggcaggaggaagggcttcagtcttgccaaaggctggtgttcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acttcatgcccatggggcaggaggaagggcttcagtcttgccaaaggctggtgttcctgg 346

                                                                       
Query: 61  aatccaaagcaacttaaaaagtaagtttgaggacaatgacagtgataggcttctatgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aatccaaagcaacttaaaaagtaagtttgaggacaatgacagtgataggcttctatgact 286

                                                                       
Query: 121 tcatcccaggcaaaggggacacatagatgcagactgaagacatagatgcagtccttcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcatcccaggcaaaggggacacatagatgcagactgaagacatagatgcagtccttcatc 226

                                    
Query: 181 ctgcttgcctggacctacgtgaggc 205
           |||||||||||||||||||||||||
Sbjct: 225 ctgcttgcctggacctacgtgaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)