Query= MSMg01no404_a02.b1 MSMg01no404_a02.b1 CHROMAT_FILE:
MSMg01no404_a02.b1 PHD_FILE: MSMg01no404_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:30 2005
(482 letters)
>mm_chr3_127545320_127546202
Length = 883
Score = 866 bits (448), Expect = 0.0
Identities = 466/472 (98%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 12 gaattctttacttctcagctgtcaagaggcttcaaccttccactttggagtgaagggttc 71
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 683 gaattctttacttctcagctgtcaagaggcttcaatcttccactttggagtgaagggttc 624
Query: 72 ttttcctttcatgttcccttaagccat-catctttctctatcctgcctcaagactaggca 130
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 623 ttttcctttcatgttcccttaagccctccatctttctctatcctgcctcaagactaggca 564
Query: 131 aaagcttgaacatcttttttgagttagcctcagagctaacatatgatttctgtcactgtc 190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaagcttgaacatcttttttgagttagcctcagagctaacatatgatttctgtcactgtc 504
Query: 191 ggaagcttgattccatgggagggatggatcatggaaggtaccactcaatggggaaactac 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggaagcttgattccatgggagggatggatcatggaaggtaccactcaatggggaaactac 444
Query: 251 taatattgcattcattataggacaggacacttacagtgggaggtgctgaaatcatgtgac 310
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatattgcattcatcataggacaggacacttacagtgggaggtgctgaaatcatgtgac 384
Query: 311 tcctctgcctttatagggtttggtcttgacccctccccttgagtgttcaagactcttcag 370
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcctctgcctttatagtgtttggtcttgacccctccccttgagtgttcaagactcttcag 324
Query: 371 taggatggggaaacctctgctgtttctttcccatctttgccaggatgcttgatgtcagac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taggatggggaaacctctgctgtttctttcccatctttgccaggatgcttgatgtcagac 264
Query: 431 ctgtaccctgcagactctatctgaatggttccgggtgaggatttcccaatgg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgtaccctgcagactctatctgaatggttccgggtgaggatttcccaatgg 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_a02.g1 MSMg01no404_a02.g1 CHROMAT_FILE:
MSMg01no404_a02.g1 PHD_FILE: MSMg01no404_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:30 2005
(444 letters)
>mm_chr3_127362512_127363355
Length = 844
Score = 766 bits (396), Expect = 0.0
Identities = 430/452 (95%), Gaps = 18/452 (3%)
Strand = Plus / Plus
Query: 1 tgaaatgtctattaagatcagtggccataaagacattaactttctttttacatatttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaatgtctattaagatcagtggccataaagacattaactttctttttacatatttttc 260
Query: 61 aattttgtctcttaaacatttggtatgcatgctggttagaaaatatttgtaattggaccc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttttctcttaaacatttggtatgcatgctggttagaaaatatttgtaattggaccc 320
Query: 121 ttttggacaaatcttcaaaaatgatcccatagataaaggtcaatacatcccaaagaccaa 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ttttggacaaatcttcaaaaatgatcccatagataaagatcaatacatcccaaagaccaa 380
Query: 181 tgtgttcagttcatgctgagtttcattttaatcaaacatacacacacacacacacacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgttcagttcatgctgagtttcattttaatcaaacatacacacacacacacacacaca 440
Query: 241 cacacacacacacacacacacacacacacacacagagggggtgggttctctgtgtggcct 300
|||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 441 cacacacacacacacacacacaca----------gagggggtgggttctctgtgtagcct 490
Query: 301 tctctgtctcagaacttgctctg--------tatgtagaccagcagaccttgaactccga 352
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 491 tctctgtctcagaacttgctctgcatctctgtatgtagaccagcagaccttgaactccga 550
Query: 353 gatcccctgcctctgctcctgagtgctggagtcaaaggtgtgagcccagctttaataaaa 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 551 gatcccctgcctctgctcctgagtgctggagtcaaaggtgtgagcccagctttaatcaaa 610
Query: 413 cttttaaaaacatgaatgacaacgtcttttga 444
||||||||||||||||||||||||||||||||
Sbjct: 611 cttttaaaaacatgaatgacaacgtcttttga 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
