BAC Information

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BAC

Clone NameMSMg01-404C23
Chromosome3 (Build37)
Map Location 136,820,816 - 136,821,283
singlet/doubletsinglet
Overlap genenone
Upstream geneBank1, LOC668868, Ppp3ca, LOC668870
Downstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404C23.T7 (MSMg01no404_c23.b1)MSMg01-404C23.TJ (MSMg01no404_c23.g1)
ACCAG502917AG502918
length768781
length of high quality
(start - end)		470 (36 - 505)422 (64 - 485)
definitionCHROMAT_FILE: MSMg01no404_c23.b1 PHD_FILE: MSMg01no404_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:45 2005CHROMAT_FILE: MSMg01no404_c23.g1 PHD_FILE: MSMg01no404_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCAAC
TTATTATCCCACTTGTGATGCAGCTGATGATGGCAAATATTAAACGACTT
TCCAGCTGGGAAAATCCTAGGTCTCATAGTCTTTGAGGCACTAATATGTA
TAAACTGGGGACAGAAGACTCACCATCATCACCTTGACAGGCATGCCCGA
TTCTGTGAGAGTCTAAGGAGGACAGAAACCATGGAGGAAGAGAGGAGTCA
CCCTGCAGGAGCTGGAGCATCCATGTCTACACCCCAACAATTGCATTTCT
CTTCTTAGACTCAACCATTATTTTAGAGGACCAGTAGCATGCTGCTGGCT
CTGCTCATCATCAAGCCATTTTACACCGGTTACCTTGGCCTCCATTGTTG
CAGTAATTGACTGATTTCACCATCAACATCATCACTCATACAGTAGGTAA
TTATAATACAATAATTAACATATTTATGTATTTTGATATTAAATCATTAT
GATTATACATGTTTTTCCTGAGGACCATGACTAATAGCACATGCCAAAAA
GAGTTCTGGGGGTAGAATATTTATTTACCCATATGAGAAACTCCAAAACT
CTTGAAAACACCTTTTCCAAAAATAATTAATACATCGGTTAAATTTGAAG
AAAAAGGCCCGCTTATTGAAGTAATTGCTCTGGCCTAATGGGCAAGGTTC
CCCAAAAAAGGATTTTTTCTTTACTTTTGCCAAAAAATTTTTTTTCGTAA
TCTCATAATATTGGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAATCACCTGA
AAAAGTGCTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACC
CTGAGATTTCATCTCACACCAGTCACAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGTTGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAAGCTTGTAAAACCACTCTGGAAATCAGTATGGCGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCACAATACCTCT
CCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAATGTGGTACATTT
ACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTTATGAAATTC
CTACGCCAATGGATGAACCTGAAGGGCATCCTCCTGAGTGGAGGAACCCA
TCCCCCAAGGAACCCCATGAAATGTATTCCCTGAAAATGGGAATTTCCCC
CCCAATTTTATTACCCCAAATTAAAATGGGTTTTGCGGAACCTGGACTGC
GAAAAAAAAACAACAACCGGGGGACCTTTTCCCCCCCCTTTAATTGAAAA
AATCCTCCTCGGGGGTTCTGAGAAAAATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_c23.b1 MSMg01no404_c23.b1 CHROMAT_FILE:
MSMg01no404_c23.b1 PHD_FILE: MSMg01no404_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:45 2005
         (470 letters)



>mm_chr3_136820611_136821483
          Length = 873

 Score =  851 bits (440), Expect = 0.0
 Identities = 460/468 (98%), Gaps = 3/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcaacttattatcccacttgtgatgcagctgatgatggcaaatatta---aacga 62
           |||||||||||||||||   ||||||||||||||||||||||||||||||||   |||||
Sbjct: 673 ggaattcaacttattataagacttgtgatgcagctgatgatggcaaatattaaacaacga 614

                                                                       
Query: 63  ctttccagctgggaaaatcctaggtctcatagtctttgaggcactaatatgtataaactg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctttccagctgggaaaatcctaggtctcatagtctttgaggcactaatatgtataaactg 554

                                                                       
Query: 123 gggacagaagactcaccatcatcaccttgacaggcatgcccgattctgtgagagtctaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gggacagaagactcaccatcatcaccttgacaggcatgcccgattctgtgagagtctaag 494

                                                                       
Query: 183 gaggacagaaaccatggaggaagagaggagtcaccctgcaggagctggagcatccatgtc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaggacagaaaccatggaggaagagaggagtcaccctgcaggagctggagcatccatgtc 434

                                                                       
Query: 243 tacaccccaacaattgcatttctcttcttagactcaaccattattttagaggaccagtag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tacaccccaacaattgcatttctcttcttagactcaaccattattttagaggaccagtag 374

                                                                       
Query: 303 catgctgctggctctgctcatcatcaagccattttacaccggttaccttggcctccattg 362
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 373 catgctgctggctctgctcatcatcaagccattttacaccagttaccttggcctccattg 314

                                                                       
Query: 363 ttgcagtaattgactgatttcaccatcaacatcatcactcatacagtaggtaattataat 422
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgcagtaattgactgatatcaccatcaacatcatcactcatacagtaggtaattataat 254

                                                           
Query: 423 acaataattaacatatttatgtattttgatattaaatcattatgatta 470
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acaataattaacatatttatgtattttgatattaaatcattatgatta 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 873
Length adjustment: 10
Effective length of query: 460
Effective length of database: 863
Effective search space:   396980
Effective search space used:   396980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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