XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
ATTTTCCCGGCTGAGATGATACTTCTCTGGGGATTCTTCTAGGAGTTTTT
TCCTGTGTGTGTGAGTGTGGAAATACTAGGGAATTAGCACACCCTGTTTT
CAGCAGTCCCCAACATTAATTCAAAGAACGTTGTGTTCAAATAACACAGG
CTATTCCAACTCCCTGAAATGTACAATTCTTGTCCACATATCAGGCTGTT
TACTAGGTCTCCTGGGAAGAATTTTATTTGATTGCCTATTGTGGATGCAG
TCTGAACTACTCGGCCTGACCAAGGCATTTCTTGACAGGTGTCACTCAGC
CCCCCAGGACTCCTGCTTGCTGCTTCTGTCCTCAAACTATTTGCATTTGA
ATCTAAGCCTCATAGACTGATTCTGCCATGAACACACAAACAACTTCTCA
TTTTGATTTCGGGAGAACATTAGAAATGTAAATGAAATAAATACCTAATT
AAAAAAATAAAAAATTAAAAAATTAAAATAATAAACTGCTCTTTCTACAG
TACAAGTCTCAGACAATGAGAATTCAAAGAGAAAAGTTTCTAATGTGATA
TCCCTCCTCTAGTGACATGCCTCTGAAAGCCACCTAACCCAATTAGTTCA
AGGCCCATGTTAAAAAGAAATCTAATTCCCCTTTTTAGAAAATGTTTTAA
AATCCTAAATCACCCGCGGGAATGTGTTCTCATTCCTG

AATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTATTTCCCAAATCCAAAATCCCCAAA
TCCACATTTTCCAAACAAAAGCATGGTCAGGCCTATCACAGCAGTACTCC
AGTCCCTGGTACCAACTTTTGTCTTAGGGGTTTGCTGCTGTGAACAGATA
CTATGACCAAGGCAACTTGTGCTGGCTAGTTTTGTGTTAACTTGACACAG
GCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAATGCCTCTACA
AGATCCAGCTGCAAGGCATTTTCTCAATTAGTGATTAAGGGGGGAGGTCC
CCTTGTGGGTGATGCCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGAGA
GCAGGCTGAGAAAGCCAGTAAATAACAACCCTCCATGGCCTCTGCATCTG
CTCCTGCTTCCTGATCTGCTTGACTTTCAGTCCTGACTTCCTTGTGGATG
AACAGCATTATGGATGTGTAATTTGAATTAAATTTTTCCTCCCCCACCGA
TTCTTGGTCATGATGTTTATGCATTAAATTTATTCCCCCCCTTTAAACCT
ATTTCTTCTATGGCTTTCCCACTCGAATATTTATTTTGCTCCCCCCCCCC
CCTTCATTACCTCTGTGTTCTTCTCTATGTCTCTCTTTCTCCCCTCTTTG
TTTTTAATATCCCGCTCTCTGTTTATTCCCATCTACTAATTCCTCTTATC
TTCTCCTTTN

Query= MSMg01no404_d06.b1 MSMg01no404_d06.b1 CHROMAT_FILE:
MSMg01no404_d06.b1 PHD_FILE: MSMg01no404_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:47 2005
         (443 letters)



>mm_chr3_20731304_20732147
          Length = 844

 Score =  766 bits (396), Expect = 0.0
 Identities = 432/444 (97%), Gaps = 1/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagatgatacttctctggggattcttctaggag-ttttttcctgtgtgtgtgagtgtg 59
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 596 ctgagatgatacttctctggggattcttctaggagtttttttcctgtgtgtgtgagtgtg 537

                                                                       
Query: 60  gaaatactagggaattagcacaccctgttttcagcagtccccaacattaattcaaagaac 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 536 gaaatactagggaattagcacaccctgttttcagcagtccccaacattaattcaaataac 477

                                                                       
Query: 120 gttgtgttcaaataacacaggctattccaactccctgaaatgtacaattcttgtccacat 179
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 476 gttgtgttcaaataacccaggctattctaactccctgaaatgtacaattcttgtccacat 417

                                                                       
Query: 180 atcaggctgtttactaggtctcctgggaagaattttatttgattgcctattgtggatgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atcaggctgtttactaggtctcctgggaagaattttatttgattgcctattgtggatgca 357

                                                                       
Query: 240 gtctgaactactcggcctgaccaaggcatttcttgacaggtgtcactcagccccccagga 299
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 356 gtctgaactactcggcctgaccaaggtatttcttgacaggtgtcactcacccccccagga 297

                                                                       
Query: 300 ctcctgcttgctgcttctgtcctcaaactatttgcatttgaatctaagcctcatagactg 359
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctcctgcttgctgcttctgtcagcaaactatttgcatttgaatctaagcctcatagactg 237

                                                                       
Query: 360 attctgccatgaacacacaaacaacttctcattttgatttcgggagaacattagaaatgt 419
           |||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||
Sbjct: 236 attctgccatgaacacacaaacaatttctcattttggtttcgggatagcattagaaatgt 177

                                   
Query: 420 aaatgaaataaatacctaattaaa 443
           ||||||||||||||||||||||||
Sbjct: 176 aaatgaaataaatacctaattaaa 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 844
Length adjustment: 10
Effective length of query: 433
Effective length of database: 834
Effective search space:   361122
Effective search space used:   361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)