BAC Information

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BAC

Clone NameMSMg01-404E03
Chromosome3 (Build37)
Map Location 28,510,835 - 28,688,905
singlet/doubletdoublet
Overlap geneTnik, Slc2a2, EG624446, Eif5a2
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneRpl22l1, Gm1527, 6130401L20Rik, LOC100040676
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404E03.T7 (MSMg01no404_e03.b1)MSMg01-404E03.TJ (MSMg01no404_e03.g1)
ACCAG502972AG502973
length746760
length of high quality
(start - end)		430 (61 - 490)422 (65 - 486)
definitionCHROMAT_FILE: MSMg01no404_e03.b1 PHD_FILE: MSMg01no404_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:51 2005CHROMAT_FILE: MSMg01no404_e03.g1 PHD_FILE: MSMg01no404_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,688,476 - 28,688,905)(28,510,835 - 28,511,256)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTCAGTTC
CTCTGCCGGTCTCCCGCTGTCATAGCTCATGCATTTAACGCTGGAAGGTG
TCCAGAGTCTAGTCACTTTCTCTGTGGCTATTAAAAGCCACGAGAAGCTG
GTTCGTATTTCTCTTTCTCCATCTTCCTCCTCCTTGTGTCTCCCTATCTC
TCCCATCTCTAAAACTCTCTATAACTATTGCTCTTAAAAAAAGAAGGAAG
AAGCCAGTGGTGTTACCATTAACTCTCAAGAATGTTTTGTACAAAATTCC
ATCTTTCCTCACAGTCTTTCCAGACTCCTGACTAGCATGGCATGAGAATG
TAGCATCTTTTCTTTACTGAAAGGTCTTACTAAAATAATGGAGGGCTACT
TGGGAAAACAGGTGATTTTACATCCAGAGTGGAACCTGGAACGAGCTGCT
TACTGGAATATGAAGAACTATCAAGACCATGAATTAAGTACATTCCAAAG
GACTCAGGGATTATCATGACTAAGCTACCATTGTCCAGTAACTAAATAAC
CCAAAAATCAATACAGGTGACAAAGATAATGTGCTGAAACTCAGGTGTGT
TGTGTTGCCTGAGTTCATAGTATAATATCGATTTATTAGTCCATTTTCGT
GGGTGCTGGTAACAGGCCATCTCTATACTTGATTTCCCTTATACCCGACA
TTGCTCTCTTGTTTAATGGAACTTGCCGCCTTTTTTTGTTAATTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCCTGGCAATGGCAGTGCTTTGGGCCCCAGACTTGG
ATCTCAGCCCATCAGAGCAAGGTAAGGGGAAGGAGATCACCAGGATTATC
TGAGATGCCTGCTATGTCTCTGATCCTTTCTTCACTTTTGAAGCCTATGT
GCTTGCCATCTAGACTGGTGGCCTTTCAATAACTTCGATATGACAGGTTT
TAAAATCTGGGTAAAAACTTAGAAACACAGACACAGTTGTGGCATTGCAA
ACCATTGTCTCAGAGACCCCATTCACAGAGCCAGAAGTACAAAATCCGAG
TTCAGTTGTAGCACCAGGTCAAGAAGTATGCCCCAAGAACCACTGAGACA
TCACAAAGGTCTTGCTGGGGAAACAGTAAGTTGCTGCAGGAATTCTATAG
CTTGGTACTTACAGGACCAGTTTTGATCAGGAAGTCATCCCAGCGGCATT
ATAGAGGGTCTCTGAAATTCAGTCTTACTTCCCTGATTTATTCTATGTTC
TTCCAGAATTTTCCTTCTACCCTGCTTATTTCTTATTTCCGGCAGGTCGT
TTTCTCTTCCTTTTGGTCGGCGCTCGATATCTCTTTGCAGGCTGCTAATG
TAAGTTGTGTGTTATCCCTCTTCGTGGTGGTCCTTTTTCGCCGCTCTCTA
TCGGTTGTCTGTATTCCTGTCCTTTCTTTCACTCCCCTCATCTGTTTTTG
TCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_e03.b1 MSMg01no404_e03.b1 CHROMAT_FILE:
MSMg01no404_e03.b1 PHD_FILE: MSMg01no404_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:51 2005
         (430 letters)



>mm_chr3_28688117_28688946
          Length = 830

 Score =  824 bits (426), Expect = 0.0
 Identities = 429/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccgctgtcatagctcatgcatttaacgctggaaggtgtccagagtctagtcactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctcccgctgtcatagctcatgcatttaacgctggaaggtgtccagagtctagtcactttc 730

                                                                       
Query: 61  tctgtggctattaaaagccacgagaagctggttcgtatttctctttctccatcttcctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tctgtggctattaaaagccacgagaagctggttcgtatttctctttctccatcttcctcc 670

                                                                       
Query: 121 tccttgtgtctccctatctctcccatctctaaaactctctataactattgctcttaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tccttgtgtctccctatctctcccatctctaaaactctctataactattgctcttaaaaa 610

                                                                       
Query: 181 aagaaggaagaagccagtggtgttaccattaactctcaagaatgttttgtacaaaattcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagaaggaagaagccagtggtgttaccattaactctcaagaatgttttgtacaaaattcc 550

                                                                       
Query: 241 atctttcctcacagtctttccagactcctgactagcatggcatgagaatgtagcatcttt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atctttcctcacagcctttccagactcctgactagcatggcatgagaatgtagcatcttt 490

                                                                       
Query: 301 tctttactgaaaggtcttactaaaataatggagggctacttgggaaaacaggtgatttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctttactgaaaggtcttactaaaataatggagggctacttgggaaaacaggtgatttta 430

                                                                       
Query: 361 catccagagtggaacctggaacgagctgcttactggaatatgaagaactatcaagaccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 catccagagtggaacctggaacgagctgcttactggaatatgaagaactatcaagaccat 370

                     
Query: 421 gaattaagta 430
           ||||||||||
Sbjct: 369 gaattaagta 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_e03.g1 MSMg01no404_e03.g1 CHROMAT_FILE:
MSMg01no404_e03.g1 PHD_FILE: MSMg01no404_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:52 2005
         (422 letters)



>mm_chr3_28510635_28511456
          Length = 822

 Score =  731 bits (378), Expect = 0.0
 Identities = 411/422 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctggcaatggcagtgctttgggccccagacttggatctcagcccatcagagcaaggta 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctggcaatggcagtgctctgggccccagacttggatctcagcccatcagagcaaggta 260

                                                                       
Query: 61  aggggaaggagatcaccaggattatctgagatgcctgctatgtctctgatcctttcttca 120
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aggggaaggagatcaccatgattatctgagatgcctgctatttctctgatcctttcttca 320

                                                                       
Query: 121 cttttgaagcctatgtgcttgccatctagactggtggcctttcaataacttcgatatgac 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttgaagcctatgtgcttgtcatctagactggtggcctttcaataacttcgatatgac 380

                                                                       
Query: 181 aggttttaaaatctgggtaaaaacttagaaacacagacacagttgtggcattgcaaacca 240
           ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 381 aggtttttaaatctgggtaaaaacttggaaacacagacacagttgcggcattgcaaacca 440

                                                                       
Query: 241 ttgtctcagagaccccattcacagagccagaagtacaaaatccgagttcagttgtagcac 300
           |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct: 441 ttgtctcagagaccccattcacagagccagaaatacaaaatctgagttgagttgtagcac 500

                                                                       
Query: 301 caggtcaagaagtatgccccaagaaccactgagacatcacaaaggtcttgctggggaaac 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtcaagaagtgtgccccaagaaccactgagacatcacaaaggtcttgctggggaaac 560

                                                                       
Query: 361 agtaagttgctgcaggaattctatagcttggtacttacaggaccagttttgatcaggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaagttgctgcaggaattctatagcttggtacttacaggaccagttttgatcaggaag 620

             
Query: 421 tc 422
           ||
Sbjct: 621 tc 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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