Query= MSMg01no404_h01.b1 MSMg01no404_h01.b1 CHROMAT_FILE:
MSMg01no404_h01.b1 PHD_FILE: MSMg01no404_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:07 2005
(474 letters)
>mm_chr3_127877791_127878664
Length = 874
Score = 774 bits (400), Expect = 0.0
Identities = 441/474 (93%), Gaps = 30/474 (6%)
Strand = Plus / Plus
Query: 1 ctgcattgactagcatgcacatggctctaggatctgtccccaaatgctaccaaaccaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctgcattgactagcatgcacatggctctaggatctgtccccaaatgctaccaaaccaaac 290
Query: 61 caaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaac 120
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 caaaccaaaccaaaccaaaccaaaccaaaccaaaccaaacca------------------ 332
Query: 121 caaaccaaaccagaacaaaaacttagggatctgctataaaaattaaatgtcttgcaaaag 180
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 333 ------------gaacaaaaacttaggtatctgctataaaaattaaatgtcttgcaaaag 380
Query: 181 atggtggcatacacctgaaatcctagatttcaggaagctgagacagagagattgggtgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtggcatacacctgaaatcctagatttcaggaagctgagacagagagattgggtgta 440
Query: 241 tatgaggtcagtctgctctgtggagagaaaatccatatcaacatatatgcctcaaaaata 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgaggtcagcctgctctgtggagagaaaatccatatcaacatatatgcctcaaaaata 500
Query: 301 tatgacttcatctataactgataaatattataaaacacaattatatacaaattaattata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgacttcatctataactgataaatattataaaacacaattatatacaaattaattata 560
Query: 361 taaaaatatagtaattcatgcttgtcaaatttggggacttcatttgctatctgccaataa 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaaatatagtaattcatgcttgttaaatttggggacttcatttgctatctgccaataa 620
Query: 421 tttaaagacttaataattactaaatactacatgctcccatctaccccttcttgg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaaagacttaataattactaaatactacatgctcccatctaccccttcttgg 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_h01.g1 MSMg01no404_h01.g1 CHROMAT_FILE:
MSMg01no404_h01.g1 PHD_FILE: MSMg01no404_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:07 2005
(567 letters)
>mm_chr3_128056560_128057527
Length = 968
Score = 1036 bits (536), Expect = 0.0
Identities = 561/570 (98%), Gaps = 3/570 (0%)
Strand = Plus / Minus
Query: 1 aagatggtggtacctgggatatttatacccttgaaaatggattacaacatgactgacaac 60
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 712 aagatggtggtacctgggatatttatatccttgaaaatggattacaacataactgacaac 653
Query: 61 acattatacctgctacaatacaatatca-ttatcaatcatcttttccctcaattaggatg 119
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 652 acattatacctgctacaatacaatatcacttatcaatcatcttttccctcaattaggatg 593
Query: 120 accgttctagtgacaatcgcacaaagacacagagcaagtggatatttcaggttaggtaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 accgttctagtgacaatcgcacaaagacacagagcaagtggatatttcaggttaggtaag 533
Query: 180 ttcttgtaaagttcactgattccaagatgccaaagtagataccaagtaaatctctatgat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttcttgtaaagttcactgattccaagatgccaaagtagataccaagtaaatctctatgat 473
Query: 240 attttgataggtctcaagtacactgcaaatgcttatggcaccaaatgacaatacattcag 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 attttaataggtctcaagtacactgcaaatgcttatggcaccaaatgacaatacattcag 413
Query: 300 atgacagtgcatgaaactttgtgaagctaatgatgcagtgcaaaaataaactctttttac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgacagtgcatgaaactttgtgaagctaatgatgcagtgcaaaaataaactctttttac 353
Query: 360 tatagtatttgaattcaaaatggggaatgtgttttcattagtcttgttagattgcctgga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tatagtatttgaattcaaaatggggaatgtgttttcattagtcttgttagattgcctgga 293
Query: 420 gccttgcatgttaaggtagtttagacatattatggagactgtactgtaattgtccttgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gccttgcatgttaaggtagtttagacatattatggagactgtactgtaattgtccttgta 233
Query: 480 ttttatattatcctatgtgattattttgttattatatatcatactacatatgtgtatata 539
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 232 ttttatattatcctatgtgattattttgttattatatatcatactacatatctatatata 173
Query: 540 tatatgt--gtgtatatatgtatatataca 567
||||| | |||||||||||||||||||||
Sbjct: 172 tatatatatgtgtatatatgtatatataca 143
Score = 95.5 bits (49), Expect = 1e-23
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 145 gacacagagcaagtggatatttcaggttaggtaagttcttgtaaagttc 193
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gacacagagcaagtggatatttcaggttaggtaagttcttgtaaagttc 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
