XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATTGATCTCCATCTCTAGCCTTTTAACCATATATTCTGCAATATTTAAT
TGACTAAATATTATTAATAACCTTGATTATTTTTTATTTTACAAATAACA
AAAATTCAGTGTAACTTGTATTAATTAAGCGAATGTGTTCTAAACCTGCC
TGGGTACATATCTAGTGGGCACATCAGAGTGTTACCATTAATATACCTCA
CGTTATGCATCTCCCATATTTTTAAGAAAAGGAAATTAAGACTTTCAGCT
ACTGTAAAAAACTATAAGCCACATATGTGGGTCCTTGACACCAGGTATGC
CTACTGAACCAGTGCACCCTTATTGTATCCTCAACATTTTTAGAATTTTT
AGAAACTGTTAGATATTAATAGCAAAATGGATGTCTCTTTCACAAGGAAA
CCTAGGAGCCAGGAGTGCTTTGCTCAGTGGTGCTGCTAGTCATCGTTCAC
AGAGATTTTCTCTGTTACTTTGTATGCATATCTGAGCTAGAATGCCGAAT
TACAGTATGCAAAAAATGAAAGTCCAAGTGTTTATATAATGTTACCAAGC
CCTGTGGAGAAAAGGCCTTTGAATAAAATGTTTTACAAGTAACAAACGCC
TGACCTTAAACCAATGTGAATCTTTTGGGAAAAAAAGCTTTTCCCAACCT
CTCATCTTTTATTTAATAACACAACCTGTCCACTTTTCGCCTAGACTTAT
ATCCCAAAAAAAA

AAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAACAGAGGAATACCAAATGGCTGAGAAGT
ACCTGAATAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACGACCCTGATATTCCACCTCACACCAGTCAGAACAAAAATTCAGGTGAC
AGAAGATGCTAGCAATGTTGTGGTGAAAGAGGAACACTCCTCCATTGCTG
GTGGGATTGCAAGGTGGTACAACCACTCTGAAAATCAGTTTGGCGGTTCC
TCAGAAAATTGGTCATAATACTACTGGAAGATCCAGCAATAACTCTCCTT
GGCATATATATAGAAGATGTTCCAACTTGTAATAAGGACACATAGCAGCC
TTATTTATAATAGCCAGAAGCTGAGAAAAAAACCCAGATGTCCCTCTATA
GAAGAATGGGTACAGAAAATGTGGTACATTTATACAATGGAGTACTACTC
AGCTATTAATCAATGAATTTATGAAATTCTTAGTCCAATGGATGGATCTG
GATGATATCATCTTGAGTGAGGNAATCTAATCCCAAAGAGCACACCTGAT
ATGCTCCCCCTGATAAAGGATATGAGCCCTGAAACTTAAAAACCCAAATT
CCTTTTTGTTAACACTGTAACTCCCGAAGGAGGAAAACCCGGGGGGGGAA
ATTTTCTCCCCCTTTTAATGGGAGAAAAAAAACCCTTCCAAGG

Query= MSMg01no404_l16.b1 MSMg01no404_l16.b1 CHROMAT_FILE:
MSMg01no404_l16.b1 PHD_FILE: MSMg01no404_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:30 2005
         (456 letters)



>mm_chr3_5097831_5098686
          Length = 856

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattgatctccatctctagccttttaaccatatattctgcaatatttaattgac 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaattctattgaactccatctctagccttttaaccatatattctgcaatatttaattgac 597

                                                                       
Query: 65  taaatattattaataaccttgattattttttattttacaaataacaaaaattcagtgtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 taaatattattaataaccttgattattttttattttacaaataacaaaaattcagtgtaa 537

                                                                       
Query: 125 cttgtattaattaagcgaatgtgttctaaacctgcctgggtacatatctagtgggcacat 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 536 cttgtattaattaagcgaatgtgttctaaaccagcctgggtacatatctagtgggcacat 477

                                                                       
Query: 185 cagagtgttaccattaatatacctcacgttatgcatctcccatatttttaagaaaaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cagagtgttaccattaatatacctcacgttatgcatctcccatatttttaagaaaaggaa 417

                                                                       
Query: 245 attaagactttcagctactgtaaaaaactataagccacatatgtgggtccttgacaccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 416 attaagactttcagctactgtaaaaaactataagccacatatgtgggtccttgaccccag 357

                                                                       
Query: 305 gtatgcctactgaaccagtgcacccttattgtatcctcaacatttttagaatttttagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtatgcctactgaaccagtgcacccttattgtatcctcaacatttttagaatttttagaa 297

                                                                       
Query: 365 actgttagatattaatagcaaaatggatgtctctttcacaaggaaacctaggagccagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 actgttagatattaatagcaaaatggatgtctctttcacaaggaaacctaggagccagga 237

                                           
Query: 425 gtgctttgctcagtggtgctgctagtcatcgt 456
           ||||||||||||||||||||||||||||||||
Sbjct: 236 gtgctttgctcagtggtgctgctagtcatcgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)