BAC Information

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BAC

Clone NameMSMg01-404M08
Chromosome3 (Build37)
Map Location 73,280,092 - 73,280,557
singlet/doubletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404M08.T7 (MSMg01no404_m08.b1)MSMg01-404M08.TJ (MSMg01no404_m08.g1)
ACCAG503360AG503361
length766732
length of high quality
(start - end)
190 (321 - 510)444 (70 - 513)
definitionCHROMAT_FILE: MSMg01no404_m08.b1 PHD_FILE: MSMg01no404_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:33 2005CHROMAT_FILE: MSMg01no404_m08.g1 PHD_FILE: MSMg01no404_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCAT
GCACTTTCCAGCAAGTCAGCAGAGTCAGTTAAAGCCAGAGAGAATCAGGA
GTCAGAAGATTAGAAACACTGCCAGAGTCAGTTTAAAGCCAAGCAGAGAA
ATTCTGTGAAATGGTGAGAGAAGGCAGATTGAATCAGTCATCTTGAAGAG
GAGTTTGAGGCAGAACAGCTGAGTTGAAGCAGCCATCCAGAGTTTAGAAA
GAACTAGAAAGGCTGAGCTCATTCAGCAGCAAGTCCCAGAGGCTGAAAAC
ACTTTAGGTATAGGTTTTTTATAGTATAAAAGCTTCCAGACTTAGGCCTA
GGTAAGGAGATGGAATCAGTAAGCCTCTGAGATTACAGTTACATCAGGCA
AATAAACGTTACTTTTATAGACATCCTAACCTTTGAACACTTCAGTATTA
CATTGTTAAAGCTGTGCTGCAGAAGATGCTTAGTTCAACATGTGGGCAGT
TATCATAGATTTTCACAGTGAAGTTGAAGTGTGATCACTTGCAGACTGAA
GTTTGACTTTATTTGTAGAAAGCGGTTACCACTATCAGATTAAGGATCTC
TTATATTTTTTACGCCCCGCTTATATTAAAAAGTAGGTCTGTTTTCCCTG
TTTAATTCTATGTGTTTATATTAGTCAGATGTTTTTTCTATTTTTTATAT
TTTCTTTGTTCTGCCTCCTTTATTATTTTTTTCCCTTATTTTTTTTTCTC
TTTCTACCTCCCCCTN
TTTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAAAATGGGAGTAGGGTATCTCTGACTCT
TTTACCTGCTCGTGGGACCCTTCTCTTCCTTCTGGGTTGTCATTTCCAGC
CTTGTTACAATGTTTGGCAGATATCCTTGTTTATGTGGATAATAGAGACT
GAATACTAGTCTTCTAGCTTCTGCTAGACACACTTTATCCACTAAATGAT
TTCCACATGCTTAGCTATAGTTCTTAAGAACAATAGGATGTTATGATTAA
GTCTTGTAATTTTTATTATTTACAGAAACTTTTAGCACTAATTGTAAAAG
AACAGAATAAAAACTCCTTTTATAATCTCAGAGAAGGAGACAGTTTTGGA
GTTGATGTAATGTGATTTTCCATGAGAAAAGTTGTAGTTAATGTGTAATT
TTTATTGCATGCAATTTGATCCTTTTATTTGGTCTTGAATTTTATCAGCT
GCTTTTATTTTCTGTAAATGGAAAGAGAATACCTCCCAGAGTAAGTCATG
TTATATAGTACTGGTTTGCTCCAGTCAGTGTTTGTTTTTCCTCCCCTGAA
TATTTATTTCACGTTATCCTATAGGTCGATGAGTAAACACACCTGTATTG
GAAATATTCTGACTCTCTTCAAATTATTGTTTTTCATGATTATCCCCTTC
CCCCCATATTATCGGTTATCATTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_m08.g1 MSMg01no404_m08.g1 CHROMAT_FILE:
MSMg01no404_m08.g1 PHD_FILE: MSMg01no404_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:33 2005
         (444 letters)



>mm_chr3_73279914_73280757
          Length = 844

 Score =  762 bits (394), Expect = 0.0
 Identities = 438/470 (93%), Gaps = 30/470 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaaatgggagtagggtatctctgactcttttacctgctcgtgggacccttctcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 caaaaaatgggagtagggtatctctgactcttttacctgctcgtgggacccttctcttcc 238

                                                                       
Query: 61  ttctgggttgtcatttccagccttg----------------------ttacaatgtttgg 98
           |||||||||||||||||||||||||                      |||||||||||||
Sbjct: 239 ttctgggttgtcatttccagccttgctttgagggcttgtttccaaatttacaatgtttgg 298

                                                                       
Query: 99  cagatatccttgtttatgtggataatagagactgaatactagtcttctagcttctgctag 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagatatccttgtttatgtggataatagagactgaatactagtcttctagcttctgctag 358

                                                                       
Query: 159 acacactttatccactaaatgatttccacatgcttagctatagttcttaagaacaatagg 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acacactttatccactaaatgatttccacatgcttagctatagttcttaagaacaatagg 418

                                                                       
Query: 219 atgttatgattaagtcttgtaatttttattatttaca----gaaacttttagcactaatt 274
           ||||||||||||||||||||||||||||  |   |||    |||||||||||||||||||
Sbjct: 419 atgttatgattaagtcttgtaatttttaa-a---acaaatagaaacttttagcactaatt 474

                                                                       
Query: 275 gtaaaagaacagaataaaaactccttttataatctcagagaaggagacagttttggagtt 334
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 475 gtaaaagaacagaataaaaactcctttcataatctcagagaaggagacagttttggagtt 534

                                                                       
Query: 335 gatgtaatgtgattttccatgagaaaagttgtagttaatgtgtaatttttattgcatgca 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gatgtaatgtgattttccatgagaaaagttgtagttaatgtgtaatttttattgcatgca 594

                                                             
Query: 395 atttgatccttttatttggtcttgaattttatcagctgcttttattttct 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 atttgatccttttatttggtcttgaattttatcagctgcttttattttct 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)