Query= MSMg01no404_n08.b1 MSMg01no404_n08.b1 CHROMAT_FILE:
MSMg01no404_n08.b1 PHD_FILE: MSMg01no404_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:38 2005
(350 letters)
>mm_chr3_70918584_70919333
Length = 750
Score = 617 bits (319), Expect = 0.0
Identities = 344/357 (96%), Gaps = 10/357 (2%)
Strand = Plus / Plus
Query: 1 ttggtaagacttgcattaagcctgaaagttagactgtggattatcactttttcttcaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtaagacttgcattaagcctgaaagttagactgtggattatcactttttcttcaata 260
Query: 61 catgaagtatatctcttcatttgttaaaatgatttttccttttttgacaagcaacattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgaagtatatctcttcatttgttaaaatgatttttccttttttgacaagcaacattaa 320
Query: 121 tattaggacacatagcctacatgatttattcatcttaatttcttctgaacagttataagc 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tattaggacacatagcctacatgatttactcatcttaatttcttctgaacagttataagc 380
Query: 181 attatgctgtcttttaaaccttatgtatgaatgtgtatgtgcatctctctctctctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatgctgtcttttaaaccttatgtatgaatgtgtatgtgcatctctctctctctctct 440
Query: 241 ctctctctctccctctctttctc-c-----ctctctctctccctc----tccctctctct 290
||||||||||| |||||| |||| | ||||||||||||||| |||||||||||
Sbjct: 441 ctctctctctctctctctctctctctctctctctctctctccctccctctccctctctct 500
Query: 291 ctatctctctgtgtgtacataataggtgatgagatttagtcatcttccatcatgtgg 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatctctctgtgtgtacataataggtgatgagatttagtcatcttccatcatgtgg 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_n08.g1 MSMg01no404_n08.g1 CHROMAT_FILE:
MSMg01no404_n08.g1 PHD_FILE: MSMg01no404_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:38 2005
(327 letters)
>mm_chr3_71095416_71096142
Length = 727
Score = 547 bits (283), Expect = e-160
Identities = 316/331 (95%), Gaps = 9/331 (2%)
Strand = Plus / Minus
Query: 1 atcacagttatattaatctacatattgaaataggtactaaaatattgactcttcataaat 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atcacagttatattactctacatattgaaataggtactaaaatattgactcttcataaat 339
Query: 61 aaagagatatgaaatataactattaagaaatattagagagtgtaccaagtaaagatctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaagagatatgaaatataactattaagaaatattagagagtgtaccaagtaaagatctgc 279
Query: 121 aagtggcctctaaagatacagtcactagagtggttggagaaacaggaaactctgtataca 180
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 acgaggcctctaaagatacagtcactagagtggttggagaaacaggaaactctgtataca 219
Query: 181 acacaagacaatggtattatggtttgtatacgtttggcccagggaggggcactattagaa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 218 acacaagacaatggtattatggtttgtatacgtttggcccagggagtggcactattagaa 159
Query: 241 gttgtatt----ctttgctggagtaagtgtggcctttgttgggataggtatgtcactgtg 296
||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gttgt---ggccctgt--tggagtaagtgtggcctttgttgggataggtatgtcactgtg 104
Query: 297 agtgcgggctttaagaccctcatcctagctg 327
|||| ||||||||||||||||||||||||||
Sbjct: 103 agtgtgggctttaagaccctcatcctagctg 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
