Query= MSMg01no405_b01.b1 MSMg01no405_b01.b1 CHROMAT_FILE:
MSMg01no405_b01.b1 PHD_FILE: MSMg01no405_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:57 2005
(520 letters)
>mm_chr3_44922817_44923736
Length = 920
Score = 826 bits (427), Expect = 0.0
Identities = 490/525 (93%), Gaps = 26/525 (4%)
Strand = Plus / Minus
Query: 9 tcttctat-tcctgtagatacaaccaatggggtaaatttggctttcaaccctgatcattt 67
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tcttctatatactgtagatacaaccaatggggtaaatttggctttcaaccctgatcattt 861
Query: 68 cctgtaagctgccagcataggaaaaggtagttagtgtctgactgatgcagactcaaatta 127
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 860 cctgtaagctgccagcataggaaaagg----tagtgtctgactgatgcaggctcaaatta 805
Query: 128 agtgaatgtcctggctgtctatcaatatgtcatcccatttgtcatttctacttaactcac 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agtgaatgtcctggctgtctatcaatatgtcatcccatttgtcatttctacttaactcac 745
Query: 188 ctccagtccacttggaaatattcccatttttctttttttttttttttttaggagatagta 247
|||||||||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct: 744 ctccagtccacttggaaatactcccatttttc--------ttttttttaagaagatagta 693
Query: 248 atctacaactatatggtgcatcccggtacctgtagcatatgcttgtggtccaggcattgg 307
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 692 atctacaactatatggtgcatcccgggacctgtagcatatgcttgtggtccaggcattgg 633
Query: 308 ggttgttctggagctggggatggagggtcggttctggtctgttccgggaccagcattttc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggttgttctggagctggggatggagggtcggttctggtctgttccgggaccagcattttc 573
Query: 368 ccctcccttttcagtctctccctctgctttcaactgccactgcctgctactgcagagtct 427
||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 572 ccctcccttctcagcctctccctctgcttccaactgccactgcctgctactgcagagtct 513
Query: 428 cttggttgtctgtctctttcctgtctggctactttacataactgaattgaaaatgtatat 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttggttgtctgtctctttcctgtctggctactttacataactgaattgaaaatgtatat 453
Query: 488 atacagatagtgt--------agtg-----taagtaagtgaaatt 519
||||||||||||| |||| |||||||||||||||
Sbjct: 452 atacagatagtgtgccttttaagtgtagtataagtaagtgaaatt 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_b01.g1 MSMg01no405_b01.g1 CHROMAT_FILE:
MSMg01no405_b01.g1 PHD_FILE: MSMg01no405_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:57 2005
(478 letters)
>mm_chr3_44737714_44738591
Length = 878
Score = 917 bits (474), Expect = 0.0
Identities = 477/478 (99%)
Strand = Plus / Plus
Query: 1 agattaaaataaaaacaagtttcatctcagaatgctgaggagacagatgtaaactagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattaaaataaaaacaagtttcatctcagaatgctgaggagacagatgtaaactagcac 260
Query: 61 ataactgaacttgggttagaatatcaagaataataagttaatagctagtcagagaacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataactgaacttgggttagaatatcaagaataataagttaatagctagtcagagaacaag 320
Query: 121 tcaaaacttatggcctaggaatttattaatgaataattgggatcagatttgttattggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaacttatggcctaggaatttattaatgaataattgggatcagatttgttattggtg 380
Query: 181 caaattaagtggtagggaggaaaaattagattttatatttatagaatctattcattacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaattaagtggtagggaggaaaaattagattttatatttatagaatctattcattacaa 440
Query: 241 aattgagtcatgttaaatggcaataattctaattcttcctttcatattctttagatgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattgagtcatgttaaatggcaataattctaattcttcctttcatattctttagatgttt 500
Query: 301 cgcttgctttgtggctacagcctgaagcaaaatattgaatgagagcagagataactgccc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttgctttgtggctacagcctgaagcaaaatattgaatgagagcagagataactgccc 560
Query: 361 tcccttatcacctttagaagaaatgctttcagttttcttgcagttagtataatatcacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcccttatcacctttagaagaaatgctttcagttttcttgcagttagtataatatcacct 620
Query: 421 gtgggcttttcatgtcttgccttcattgttttgaggtatattcactctattgctagaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggcttttcatgtcttgccttcattgttttgaggtatattcactctattgctagaa 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
