NNNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTTTCCAATCTCAAATGCCTGAGAATCACCTAAAGAA
ATGTTCAACATCCTTAGTCTTCAGGAAATTGAAAATCAAAACAACCCTGA
GATTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAGCTCAGGTGAC
AGCAGATGCTGGTGAGGTTGTGGAGAAAGAATAACACTCCTTCATTTCTA
GTGTGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGTGGTTCC
TCAGAAAATGCGACATAGTACTACCTGAGGACCCAGCTATACCACTCCTG
GGCATATACCCAAAAGATGCTTTGATGTAAAACAAGGACACATGCTCCAC
TATGTTCATAACAGTCTTATTTATAATAGCCAGGAGCTGGAAACAACCCA
GATGCCCCTCAACAAAGGAATGTATACAGAAAATATTGTATATTTACACA
ATGGAGTACTAGTCAATTACTAAAACAATGACTTTGTGAAGTAATTTACT
ATACACCATTTGAATAACTTCCTTAACATCTGTGTTGTATGTCAGATTTG
TTCCTTGCAGACTTGTGTCTGAAAAAAGGTGATTTACCCCCCACCTACTC
CATTCTCAGTGGGCAAATACAAGGGCCAAAGAGGTATGGCCCCCCAAAAC
CCCCCTTTATAGAAATTAATCCTTAATGGGCCCAAACAAGAATTGGTAAA
TTTCATTTGTGAGGACACAAA

NTTTTCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATGAATATGTACTAAC
ATAAAATGTTCTTAGTTTAAAAAAGTTAAGCTCAACAAATTCTACAGCTT
CTCATTCATTGTTAATGTGTTAAAATGGAAAATTTTGTGTTTCTAGGTTA
TTAAATAAAAAGCAAGAATATTTGTTCACATACATAGCATGAACATAGCA
TGTAAATTTACAGTTTACATGTCTTAAATAAATTCAAAATAAGCTATAAT
TGAGTATTAAAACAACAACAACAACAACAAAAAAAGGTAGGCTCAACCAC
ATGTGTCTTTGTCCCAAAGACATGTGTACAAACCCAAGAAAGGCTAGTCT
ATTTAGTAACTTAAATTCTTTCTGTGTAAAATGCAAGCTGACTGAGTGTA
TTATCTATAGTTTTCCATACAGAGAAACACACTGTGTAATTAGCTTAAAT
TTTATGAAATGTGGATTCAAAATTCTGTTGATAAACATGGGCTCAAATTA
GCTTTTTAGTTTTGCAAAAATTAGTCCTTATTCATGTTCACATTGTAATT
TGTGAATGGGGAATAAGATGAAACTGAATGGTACATTTGGGTTCTGAAGT
GACTTAGCTTGGGGTAGTTAACTAACACCCCTTTTCCTTGGGCTGCCCCA
ACTTTTCATCTGTATTTACAGAATCATTCCCCTAAGTAGAATTATTCACC
TGCCACAGAAN

Query= MSMg01no405_e05.g1 MSMg01no405_e05.g1 CHROMAT_FILE:
MSMg01no405_e05.g1 PHD_FILE: MSMg01no405_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:12 2005
         (530 letters)



>mm_chr3_7443971_7444900
          Length = 930

 Score =  905 bits (468), Expect = 0.0
 Identities = 479/484 (98%), Gaps = 3/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 47  aagctcaacaaattctacagcttctcattcattgttaatgtgttaaaatggaaaattttg 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 aagctcaacaaattctacagcttctcattcattgttaatgtgttaaaatggaaaattttg 871

                                                                       
Query: 107 tgtttctaggttattaaataaaaagcaagaatatttgttcacatacatagcatgaacata 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tgtttctaggttattaaataaaaagcaagaatatttgttcacatacatagcatgaacata 811

                                                                       
Query: 167 gcatgtaaatttacagtttacatgtcttaaataaattcaaaataagctataattgagtat 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gcatgtaaatttacagtttacatgtcttaaataaattcaaaataagctataattgagtat 751

                                                                       
Query: 227 taaaacaacaacaacaacaacaaaaaaaggtaggctcaaccacatgtgtctttgtcccaa 286
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 taa---aacaacaacaacaacaaaaaaaggtaggctcaaccacatgtgtctttgtcccaa 694

                                                                       
Query: 287 agacatgtgtacaaacccaagaaaggctagtctatttagtaacttaaattctttctgtgt 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 693 agacatgtgtacaaacccaagaaaggctagtctatttagtaacttaaattctttctctgt 634

                                                                       
Query: 347 aaaatgcaagctgactgagtgtattatctatagttttccatacagagaaacacactgtgt 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaaatgcaagctgactgagtgtattatctatagttttccatacagagaaacacactgtgt 574

                                                                       
Query: 407 aattagcttaaattttatgaaatgtggattcaaaattctgttgataaacatgggctcaaa 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aattagcttaaattttatgaaatgtggattcaaaattctgttgataaacatgggctcaaa 514

                                                                       
Query: 467 ttagctttttagttttgcaaaaattagtccttattcatgttcacattgtaatttgtgaat 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 513 ttagctttttagttttgcaaaaattagtccttattcatgttcacattgtaatttgtgaaa 454

               
Query: 527 gggg 530
           ||||
Sbjct: 453 gggg 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)