BAC Information

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BAC

Clone NameMSMg01-405F08
Chromosome3 (Build37)
Map Location 88,454,443 - 88,454,887
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2
Downstream geneRxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405F08.T7 (MSMg01no405_f08.b1)MSMg01-405F08.TJ (MSMg01no405_f08.g1)
ACCAG503789AG503790
length786767
length of high quality
(start - end)		244 (78 - 321)426 (78 - 503)
definitionCHROMAT_FILE: MSMg01no405_f08.b1 PHD_FILE: MSMg01no405_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:17 2005CHROMAT_FILE: MSMg01no405_f08.g1 PHD_FILE: MSMg01no405_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCCCTTGCTCAAATCCACAAACCCTGGCATCTCCATTGGA
GATGTGGTAAAAAAAATCTGGGTGAGATGTGGAAGAACTTGAGTGAGAGT
GAAGCAGCCTGCGTCTCCAAGGCAGCAAAGCTGAAGGAGAAGCATGAGAA
GGGTGTCGCTGACTGTCAGTCTAAAGGGAAGTTTGAGGGGGCCAAGGGGC
CTGCTAAAGTTGCCCGGATAAAGGTGGAAGAGGAGGAGGAGGAGGAAGAG
GAAGAAGAGGAAGAGGAAGATTATTTTTTTAAGCTCCGCCTCCTTGNGAC
TACCTTANAGTATTATATCGCTGCGATTGACACATCTCTTATTTGAGCTG
TGCCTATTGCCCTCGCCAGGTTTACTTCACTAATTTGATCAGGATCCTAT
TGTATTCTCTCACTGTGCTTCTCGTTTTACCTGAATTGTTTTTGTTTGTC
CCTTACGCCCCGACCCCGTTTTCCCTTTTTTTTCTCCCCCCTTCTCTTCT
CTCATTCAGAATCTCTCTTATTCTTCTTTTCCTTACTGGACTTCGCGCCT
CCTTTCCTTCCCTCCCTTCTCCTTCACCTTCTCTCGCCCTTTTTTTTCTC
CCTCCCTCCCGCTCTGCTATTTCTTTTCTTTTCCTCCTTGATTCCTACTC
GCCATCTCTTCCCCCCCTTTTTCTCCCTCCCCCCCTACTCCTCGTGGTGG
TTCTCCCTCTCCTTTCCTGTCTATCTCTCTTTCCCN

NTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGTCCCT
TGAACTCAGACACTCACCTGCTTCTGCCTCCCATGTGCTGGAACTACAGG
CATGTACCAACGCACCTTGCTTTGATTTTTAAAAAATTACACTTTATTCA
AGTGTGTTCAGACGAGGAGACATGTTCCACATGCATGTGGCGATCAGGAC
AGCTTGGGGTCTGCTTTCTCTTTCCCCCCTCTTAAGATTCTGGGAAGCAG
TTTTCTAAACCCTCCACATGTTTATTTGGGTTTTCTTGTTTTTTCTGAGA
CAAGGTTTCTCTGTGTAGTCCTGGCTGTTCTGAAACTCACTCTGTAGACC
AGGTTGGCCTCTCAGAAATCCGCCTGCCTCTGCCTCCCAAATGCTGGGAT
TAAGGGTGTGCACCACTACTGTCTGGTTACAAAGTGTTTTTTGTTTGTTT
TTGTTTTCCGAGACAGGGTTTCTGTGTAGCCCTGGCTGTCCTGGAGCTCA
CTTTGTATACCCAGCTGACCTCCAATTCCTAAAATCCGCTGCCTCTGCCT
CCCAAGAACTGGTAATTAAAGGTTTGTTCTTCCACTCCTTGGTTCCAAAT
TTCTCTCTAATTTGGAAAAATATGTTCTGTTCTTCTTCCCCTATTTGTCC
CTTTTTCCGCCCCTTTACTACTTTTTCTTTCCAATTTTTTACCCTTTCTT
TCCCACAATATTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_f08.g1 MSMg01no405_f08.g1 CHROMAT_FILE:
MSMg01no405_f08.g1 PHD_FILE: MSMg01no405_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:17 2005
         (426 letters)



>mm_chr3_88454375_88455201
          Length = 827

 Score =  503 bits (260), Expect = e-146
 Identities = 374/446 (83%), Gaps = 58/446 (13%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctgtcccttgaactcagacactcacctgcttctgcctcccatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 actctgtagaccaggctgtcccttgaactcagacactcacctgcttctgcctcccatgtg 454

                                                                       
Query: 61  ctggaactacaggcatgtaccaacgcaccttgctttgattttt-aaaaaattacacttta 119
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 453 ctggaactacaggcatgtgccaacgcaccttgctttgatttttaaaaaaattacacttta 394

                                                                       
Query: 120 ttcaagtgtgttcagacgaggagacatgttccacatgcatgtggcgatcaggacagcttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttcaagtgtgttcagacgaggagacatgttccacatgcatgtggcgatcaggacagcttg 334

                                                                       
Query: 180 gggtctgctttctctttcccccctcttaagattctggga--------------------- 218
           |||||||||||||||||||||||||||||||||||||||                     
Sbjct: 333 gggtctgctttctctttcccccctcttaagattctgggagtcagcttaggccatcaggct 274

                                                                       
Query: 219 --------------------------agcagttttctaaaccctccaca---tgtttatt 249
                                     |||||||||||||||||||||||   ||||||||
Sbjct: 273 ttcgggcaagggtctttacccggggaagcagttttctaaaccctccacacgatgtttatt 214

                                                                       
Query: 250 tgggttttcttgtttttt-ctgagacaaggtttctctgtgtagtcctggctgttctgaaa 308
           |||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||| | 
Sbjct: 213 tgggttttcttgtttttttctgagacagggtttctctgtgtagccctggctgtcctggag 154

                                                                       
Query: 309 ctcactctgtagaccaggttggcctc----tcagaaatccgcctgcctctgcctcccaa- 363
           |||||| ||||||||| | || | ||    ||||||||||||||||||||||||||||| 
Sbjct: 153 ctcactttgtagaccaagctgacttcgaattcagaaatccgcctgcctctgcctcccaag 94

                                     
Query: 364 atgctgggattaagggtgtgcaccac 389
           | ||||||||||| || |||| ||||
Sbjct: 93  a-gctgggattaaaggcgtgctccac 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 827
Length adjustment: 9
Effective length of query: 417
Effective length of database: 818
Effective search space:   341106
Effective search space used:   341106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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