BAC Information

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BAC

Clone NameMSMg01-405I17
Chromosome3 (Build37)
Map Location 67,845,947 - 68,023,222
singlet/doubletdoublet
Overlap geneEG208426
Upstream geneRsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405I17.T7 (MSMg01no405_i17.b1)MSMg01-405I17.TJ (MSMg01no405_i17.g1)
ACCAG503950AG503951
length761765
length of high quality
(start - end)		175 (374 - 548)466 (79 - 544)
definitionCHROMAT_FILE: MSMg01no405_i17.b1 PHD_FILE: MSMg01no405_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:34 2005CHROMAT_FILE: MSMg01no405_i17.g1 PHD_FILE: MSMg01no405_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,845,947 - 67,846,121)(68,022,845 - 68,023,222)
sequence
NGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAACATGCGC
GGAATTCTATCTTTTTTCAAACTCAAGGTCAAAGTCTTCAAGGGTTTATT
AAACTTTAGTTTGTAATTTTATAAGGATTCTAAAGCTTTGATATGTTTAG
CTGATTTAAAAAAAAAAAACAAACCATGTGCTGTCAAGACAAAGGAAGAG
AATGTAGCCATCCTATGCTGGGACTTACAGTGGAGTCTATATTGCTAAGG
GTTATCTCATGATTTTTCGTTCAACTCTGATGTGACCTTTGATTTAGGCA
GGGTTCTGACCTTTTTGCAGAAAATGATTTTTCAGTAATTTCTCCAAGTT
ACTTATCCTCAGCTGGTGTGCGAAGTTGACAGTGAAAGCTGGGTCTGGAG
GCCTCCCGAGCCCTCATGTCAACAACCACCAGCTGAGTCCTCATGAACTG
GCAACAGGCATGGAGAGTCTTGCATGGTTCTGGGCACTAGGAAAGAATGT
TAGTATTCCTGAGAATACAAAAGTAGGTAATGACAACCGTGAGAGCTCTT
CAAGCACATACACTACTACAAAGAAGTAAGCCCGAGTAGCTTGGGAGGAT
AAAACGAGTCTCACAAAGAACCCAATGTATGGTCCCTTAAGAGCAGCTTA
TAATTTCTCTTTTTTTTCCTAAAGCTAAACTTGGTTTATTGACCATGTGT
TTACCAAACCACCCCTGTTTTTGGACCACATGGACAACCTTTTTTTATAG
TCCTCCCCGCC

CTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGTTAACTACGCATAAATT
AGAATGCAGATGTGGCTTTCCTTTGGTAATGACAGCAATGACATTCCAAA
GCAGGTTGCTTTTCCCATCCTGCTACATTCCACCATTTCCCAAACACAAG
GGTCTTAAATATATGCACACCCTTGGCTCCTTGCTTAGGTTTTATGTATG
TGACCCTGTAAATGTAACTTTCATTGCCTGATGAAATTGTTACTCTGGAG
ACTCACTGCTGAATAAGCTCACCTTTTCTAGTTCTTTCTGAACTCTGGCT
GCCTGGCTGGTTTAACTACGCTCTTCTGGCTCAAACTCCTCTCCATGCTG
ACTGATTCAGCCTGGCTTTTCTCAGCTTCTCAATGAACTTCTCTGCTTTG
CTTCAAACTAACTCTGGCATTGTACTCATTCCAATGACTCCTAACTGACC
GAATCACTCTTTCTGTGCTGCTCTTAAATAGCTTCTTTCCTGGGCTGTTC
TTGTGAGAGCTGGGCCTATGCTATCTTTGACTCGTTTTGTCAAATCTTTC
TGAAGCTTCCCTTTGTCTGCCCTACAATTAAATGCTTACCTTCTAACATA
GGCCTAATTTTATCTTAATGGTGCCGTTTAAAGTTGAGCGCCCGGTAACT
CTACCCTATAATTTATTCAAAGGTGCTTGTGCGACCATTATATTTTCTAC
ACCCTTTTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_i17.b1 MSMg01no405_i17.b1 CHROMAT_FILE:
MSMg01no405_i17.b1 PHD_FILE: MSMg01no405_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:34 2005
         (175 letters)



>mm_chr3_67845747_67846321
          Length = 575

 Score =  323 bits (167), Expect = 4e-93
 Identities = 173/175 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgacagtgaaagctgggtctggaggcctcccgagccctcatgtcaacaaccaccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgacagtgaaagctgggtctggaggcctcccgagccctcatgtcaacaaccaccagc 260

                                                                       
Query: 61  tgagtcctcatgaactggcaacaggcatggagagtcttgcatggttctgggcactaggaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tgagtcctcatgaactggcaacaggcatggggagtcttgcatggttctgggcactaggaa 320

                                                                  
Query: 121 agaatgttagtattcctgagaatacaaaagtaggtaatgacaaccgtgagagctc 175
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 agaatgttagtattcctgagaatacaaaagtaggtaatgacaaccatgagagctc 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no405_i17.g1 MSMg01no405_i17.g1 CHROMAT_FILE:
MSMg01no405_i17.g1 PHD_FILE: MSMg01no405_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:34 2005
         (466 letters)



>mm_chr3_68022845_68023710
          Length = 866

 Score =  723 bits (374), Expect = 0.0
 Identities = 377/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gttaactacgcataaattagaatgcagatgtggctttcctttggtaatgacagcaatgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttaactacgcataaattagaatgcagatgtggctttcctttggtaatgacagcaatgac 319

                                                                       
Query: 65  attccaaagcaggttgcttttcccatcctgctacattccaccatttcccaaacacaaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attccaaagcaggttgcttttcccatcctgctacattccaccatttcccaaacacaaggg 259

                                                                       
Query: 125 tcttaaatatatgcacacccttggctccttgcttaggttttatgtatgtgaccctgtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcttaaatatatgcacacccttggctccttgcttaggttttatgtatgtgaccctgtaaa 199

                                                                       
Query: 185 tgtaactttcattgcctgatgaaattgttactctggagactcactgctgaataagctcac 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 198 tgtaactttcattgcctgatgaaattgtcactctggagactcactgctgaataagctcac 139

                                                                       
Query: 245 cttttctagttctttctgaactctggctgcctggctggtttaactacgctcttctggctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cttttctagttctttctgaactctggctgcctggctggtttaactacgctcttctggctc 79

                                                                       
Query: 305 aaactcctctccatgctgactgattcagcctggcttttctcagcttctcaatgaacttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  aaactcctctccatgctgactgattcagcctggcttttctcagcttctcaatgaacttct 19

                             
Query: 365 ctgctttgcttcaaacta 382
           ||||||||||||||||||
Sbjct: 18  ctgctttgcttcaaacta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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