Query= MSMg01no405_n08.b1 MSMg01no405_n08.b1 CHROMAT_FILE:
MSMg01no405_n08.b1 PHD_FILE: MSMg01no405_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:56 2005
(444 letters)
>mm_chr3_138446133_138446976
Length = 844
Score = 795 bits (411), Expect = 0.0
Identities = 432/439 (98%), Gaps = 1/439 (0%)
Strand = Plus / Plus
Query: 5 caggaccccttaaaaaatgcagggtgaggcgattctgtgatcgaatgtgcagtttttgtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caggaccccttaaaaaatgcagggtgaggcgattctgtgatcgaatgtgcagtttttgtt 265
Query: 65 ttctcctatgcagcaaagaccccccacccaactccccaaggcagtgcagagcagagacaa 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttctcctatgcagcaaaga-cccccacccaactccccaaggcagtgcagagcagagacaa 324
Query: 125 aaagcactgactacagaattgcttgatcccaagtgtgaactctgaccctatcacctttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagcactgactacagaattgcttgatcccaagtgtgaactctgaccctatcacctttta 384
Query: 185 ttggtgtaacctcaggcgagctaggcaccttccatatgtcttccctgagccctccatgac 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggtgtaacctcaggcgagttaggcaccttccatatgtcttccctgagccctccatgac 444
Query: 245 aaggaaggtttatgtctgtgaagatccaaccgcatcctgtcgtgtggagaatgtttgggg 304
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 aaggaagggggatgtctgtgaagatccaaccgcagcctgtcgtgtggagaatgtttgggg 504
Query: 305 gagtccttgaatggcttttaaacactggtcttattctggctttgttctcattggaaggaa 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 gagtccttgaatggcttttaaacactggtcttattctggctttgttcccattggaaggaa 564
Query: 365 aagcctatgctgttttaggcttggaatattagtatataactgagctccttgaggattttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagcctatgctgttttaggcttggaatattagtatataactgagctccttgaggattttg 624
Query: 425 ctttgaaaagcttctatta 443
|||||||||||||||||||
Sbjct: 625 ctttgaaaagcttctatta 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_n08.g1 MSMg01no405_n08.g1 CHROMAT_FILE:
MSMg01no405_n08.g1 PHD_FILE: MSMg01no405_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:56 2005
(518 letters)
>mm_chr3_138624964_138625881
Length = 918
Score = 696 bits (360), Expect = 0.0
Identities = 402/416 (96%)
Strand = Plus / Minus
Query: 101 cagaacccacataaacccatgcatatggaatcccagtgctcctgcaacacagtggaggac 160
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 918 cagaacccacataaacccatgcatatggaatcacagtgctcctgcaacacaatggaggac 859
Query: 161 agtagcctgctgtgcccagccatgaacaagagagaggctgtcttaacaaggcaaaaggtg 220
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 858 agtagcctgctgtgcccagccatgaacaagagagagactgtcttaacaaggcaaaaggtg 799
Query: 221 aggaccaacgcttgaggctgtcctctgacctccatgtgtgcaccgtgaacacccacgatc 280
||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct: 798 aggaccaacacttgaggctgttctctgacctccatgtgtgcactgtgaacacccacaatc 739
Query: 281 atgttcgcacacacatgcacacgtgcacacaagcaaaagattaaaacagcttagtgagta 340
|||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct: 738 atgttcacacacacatgcacacgtgcacataaacaaaagattaaaacaggttagtgagta 679
Query: 341 tggttagagagatgaaagaaagatttttaaataataaaaatgcaatacagcagatttaga 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tggttagagagatgaaagaaagatttttaaataataaaaatgcaatacagcagatttaga 619
Query: 401 aataaacaaatagaaattccagaattgaaatttccaacctaaattaagtacttgctggcg 460
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 618 aataaacaaatagaaattccagagctgaaatttccaacctaaattaagtacttgctggcg 559
Query: 461 ggcaggcttctcagcaggatgcatagagtggaattaggaaacctgtgagctgaagc 516
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 558 ggcaggcttctcagcaggatgcatagagtggaattagggaacctgtgagctgaagc 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
