BAC Information

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BAC

Clone NameMSMg01-405P23
Chromosome3 (Build37)
Map Location 123,227,394 - 123,227,887
singlet/doubletsinglet
Overlap genenone
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804
Downstream geneNdst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P23.T7 (MSMg01no405_p23.b1)MSMg01-405P23.TJ (MSMg01no405_p23.g1)
ACCAG504296AG504297
length798763
length of high quality
(start - end)
393 (71 - 463)493 (75 - 567)
definitionCHROMAT_FILE: MSMg01no405_p23.b1 PHD_FILE: MSMg01no405_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:09 2005CHROMAT_FILE: MSMg01no405_p23.g1 PHD_FILE: MSMg01no405_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTTTTAAATAACACAGCCCCGTGGAAGAAGCAGAGACCAGGAAAA
CTGCCTAGGGAAAAAAAAAAAAAAAAAGCTGAGCTGAACTGAGCTGCCTG
GAAGAGTCTTAGACAAATTGAGCCACCTAGAATGGACACTCTACAACCTG
TTCAGCTGACTTCTGGTTGTGCAGTGTGGTCCAGACTGCCGGCCTTGCTG
ATCCGTTACACATGCTGGGGTGGGCTTTAGTGATGCAGTTGTCTTTGAGT
CATTTCTACTCCTGTAAGTAACTTTTTACCCATATTCCTATAAATAACCC
AGTAAAAGTCATTGGTTCACCAAAGAGGACTCTAATGGTATATACTGTGT
CATCAGTTTCCGATCTAGGGTGAGTAGACATTTGTTCATGTCTCCCCAGG
AAATGACGTCATGCAACATAGAAGATCACAAATTAAATTTTGAATTAGTT
GAGTCTGCTTTCCAATGGTTCCATTGGAGCCAACTGGCTACAGAGTTGAT
GTGCCTTGTCCCTGCTATTTTTATCCAGTTGCTAGCTGATTTGAAGAACT
AGGGTCTAAAATATTGGAGGTCTCGGGATCCCCACAAATCGTTTAATATT
TTTTTGGAAAGGAGGATTATTATTATACCCCTTGGTAATTTGGGAGCTCC
TCGCCGTCACTTCACTTTTCATATGTGACACACTCCTCGGTTTTTTTGTT
TCAGCTTACGCTCCCTGTCACAAATCTTCTTCTTTTTTTTGTTGGAAN
TCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGTACAAAAATTGGAAAGATACA
TGGAAGGAGCCAATGGTTGTACTGGCAAGAATTGTTTCTTCTTCTTAGAT
ACACTGTGCTACACTTTATGAGATACTCTGCAGAGTTTTTTCCCTAGAGA
CAGAATTAATGTTACACTGTATATATTATATATATTTCTTTCCAGAGAAA
CAGAACTGATACATACCATATATGTAATAAATATAATATGCATACTATAA
CTACATATTATATTAGTTTCTTTTCTGTTGTGATAAAATTGAAGACTGAA
AGAAACTAAAAAGAAGGAAGAGTTTATTTGGGCTTACAGTACCAGAGTGG
GGGGGGGCAATATAGTAGGGGAGCCTGGCAATAGACAGCCAGAGGAGGAA
GACCTCTCCCTCCCAGACACACCCATAAATGATAGTTAATTTGGTTTAGT
CAACTTCACATAAAACTGATCACACTTTCCTTTGCCCTTACTGCCAAAGG
GCAAGTTCATGGACTGGCTGTGTAGGCTTGAACCAGCCTTGGGCTAGAGT
CAGTGAAAACACTGAACACTGAAGCCAGCACAGAAATAGTTTCTTGAGAA
TTGCCACCCACAAAGCATGATCTTCTCCTACAAGACCACCGATGGCTCTG
ATTTAACTACCTGAAGATCTGGTAGTGCAGTGCAAATAACTGTGTATCGT
CTGGCCGTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p23.g1 MSMg01no405_p23.g1 CHROMAT_FILE:
MSMg01no405_p23.g1 PHD_FILE: MSMg01no405_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:09 2005
         (493 letters)



>mm_chr3_123227195_123228087
          Length = 893

 Score =  934 bits (483), Expect = 0.0
 Identities = 492/495 (99%), Gaps = 3/495 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgtacaaaaattggaaag-atacatggaaggagccaatggttgtactggcaagaatt 59
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcatgtacaaaaattggaaagaatacatggaaggagccaatggttgtactggcaagaatt 259

                                                                       
Query: 60  gtttcttcttcttagatacactgtgctacactttatgagatactctgcagagttttttcc 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 gtttcttcttcttagatacactgtgctacactttatgagatactctgcagagtttttt-c 318

                                                                       
Query: 120 ctagagacagaattaatgttacactgtatatattatatatatttctttccagagaaacag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctagagacagaattaatgttacactgtatatattatatatatttctttccagagaaacag 378

                                                                       
Query: 180 aactgatacataccatatatgtaataaatataatatgcatactataactacatattatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aactgatacataccatatatgtaataaatataatatgcatactataactacatattatat 438

                                                                       
Query: 240 tagtttcttttctgttgtgataaaattgaagactgaaagaaactaaaaagaaggaagagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagtttcttttctgttgtgataaaattgaagactgaaagaaactaaaaagaaggaagagt 498

                                                                       
Query: 300 ttatttgggcttacagtaccagagtggggggggg-caatatagtaggggagcctggcaat 358
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 ttatttgggcttacagtaccagagtggggggggggcaatatagtaggggagcctggcaat 558

                                                                       
Query: 359 agacagccagaggaggaagacctctccctcccagacacacccataaatgatagttaattt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agacagccagaggaggaagacctctccctcccagacacacccataaatgatagttaattt 618

                                                                       
Query: 419 ggtttagtcaacttcacataaaactgatcacactttcctttgcccttactgccaaagggc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggtttagtcaacttcacataaaactgatcacactttcctttgcccttactgccaaagggc 678

                          
Query: 479 aagttcatggactgg 493
           |||||||||||||||
Sbjct: 679 aagttcatggactgg 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)