BAC Information

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BAC

Clone NameMSMg01-406A22
Chromosome3 (Build37)
Map Location 151,735,084 - 151,931,669
singlet/doubletdoublet
Overlap geneLOC676548, Gipc2, Dnajb4, Fubp1, Nexn
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597
Downstream geneC030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750, St6galnac3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406A22.T7 (MSMg01no406_a22.b1)MSMg01-406A22.TJ (MSMg01no406_a22.g1)
ACCAG504342AG504343
length738762
length of high quality
(start - end)
468 (75 - 542)357 (78 - 434)
definitionCHROMAT_FILE: MSMg01no406_a22.b1 PHD_FILE: MSMg01no406_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:14 2005CHROMAT_FILE: MSMg01no406_a22.g1 PHD_FILE: MSMg01no406_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,931,230 - 151,931,669)(151,735,084 - 151,735,440)
sequence
TCCTTTATTXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGAGAGACCGC
GGAATTCAGTCAGTACCGAGACAGCCTTGCCATCATGAGGACCCAAGATC
AGCTCTCATTACCTAGTGTACAGATGTCAGGCATGGCAGTGCTCACTTGG
GGAGGAGGAGGCAGGACATCCCTGTAGCTGGCTGCTCAGCCTGACTAACT
GAGCTCCAGGCCTGTCAGAGACTCAAGAAGGTGGATGCTCTTCCTAAGCA
AACAGTACCTGAAGTGTTCTCTGGCCTCCACATGCACACACGTGCATCCA
CATGCATTTCAATACATGTTTGCACACCACACATGCAAAACAAAGAGGCA
CTGGCATCCACAGTGGTCATTAGTGGCCCCTCCTACACCATGCCTTCCCA
TCTCTATATGTGATCTCTCCCACAAATTCTGTGCTAACGGGTGCCACCTG
AACCAATGTCCACATCGTGCTCAAGCCAGTCCCACCACCACGTTCTAGAA
TAATGAGCGAAGTAAGCCGCAGGTAACTGTGGAGTTACTCGGCCTCAGGC
GGCTGTTACAGCAAGAGAAGTACTAATGCGCTGCCTCCTGTTGAAGCCCC
GGTTGTCCTTGAGACTCGAAGGAGACTGGCCATCGAGAGACACCTTCTAA
TTCCCAGGCGCGCTTCTATCCTCCTTCATCGGTAGCCTGTGTTCCCTGAA
AAAATGAAAGCCTTGTCGTACACCGCCGCCGGATGTCT
CCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATCATGAAGAAAGTATAAA
TAATGCTACACACTTGATTCCAAGTATTGCCAATTATGTCACCAGAATTA
TTCCTCAAGGTCATCTTAACTGACTGATTAGAAAAGATTGCAATCTCCAA
GGCTTCTTTATGACAAAATACTGTTTTGTGAAGCATCTCCATTAACTTTT
AAAATGGCATGTCAGCGTTTTCTTTTATATAATCCAGCAAGAAGGAAATG
GGCAGTTGTCTTTGCATCGTCACACCCACTAGTAAACGGCAGTGATAAAG
CAGGAAGTGGTGAGGGAAGATTGACCGTCCATAATGTCCCCACACTGATG
CTGTAAGAAAAAACGCAAGGTCTGATCAGCATTATTCACTATAGAATGGC
CAAAGCCAAGAGCTTAAAAGATCAATGTCTATGAAATATTAAATAGTTCA
GATCTGTTGACTGAGATCTAAAATATAATAGGGAAGAGATATGCTTAATA
TTTCTACATAGATAGATTCCGGATAAATAAATGCTCTAGTTATTTTTTCT
TGTTGGGAAACACCCTTATGTTTCTACTATTCTTAAGAGAATTACTCCCG
TCATAATATTGTCAAGTGCTATTATATTTCCTCACCCTTCACCGCTATCT
TTTTGGGTCATTATAATTCCCCCACCTTCCTTTTTCCGAAAAACATCCGT
CGCCCCACCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_a22.b1 MSMg01no406_a22.b1 CHROMAT_FILE:
MSMg01no406_a22.b1 PHD_FILE: MSMg01no406_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:14 2005
         (468 letters)



>mm_chr3_151930802_151931669
          Length = 868

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 29  ctctcattacctagtgtacagatgtcaggcatggcagtgctcacttggggaggaggaggc 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ctctcattacctagtgtacagatgtcaggcatggcagtgctcacttggggaggaggaggc 809

                                                                       
Query: 89  aggacatccctgtagctggctgctcagcctgactaactgagctccaggcctgtcagagac 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aggacatccctgtagctggctgctcagcctgactaactgagctccaggcctgtcagagac 749

                                                                       
Query: 149 tcaagaaggtggatgctcttcctaagcaaacagtacctgaagtgttctctggcctccaca 208
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 748 tcaagaaggtggatgctcttcctaagcaaatagtacctgaagtgttctctggcctccaca 689

                                                                       
Query: 209 tgcacacacgtgcatccacatgcatttcaatacatgtttgcacaccacacatgcaaaaca 268
           || |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 688 tgtacacacgtgcatccacatgcatttcaatacatgcatgcacaccacacatgcaaaaca 629

                                                                       
Query: 269 aagaggcactggcatccacagtggtcattagtggcccctcctacaccatgccttcccatc 328
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 628 aagaggcactggcatccacagtggtcattagcggcccctcctacaccatgccttcccatc 569

                                                                       
Query: 329 tctatatgtgatctctcccacaaattctgtgctaacgggtgccacctgaaccaatgtcca 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tctatatgtgatctctcccacaaattctgtgctaacgggtgccacctgaaccaatgtcca 509

                                                                       
Query: 389 catcgtgctcaagccagtcccaccaccacgttctagaataatgagcgaagtaagccgcag 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 catcgtgctcaagccagtcccaccaccacgttctagaataatgagcgaagtaagccgcag 449

                               
Query: 449 gtaactgtggagttactcgg 468
           ||||||||||||||||||||
Sbjct: 448 gtaactgtggagttactcgg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no406_a22.g1 MSMg01no406_a22.g1 CHROMAT_FILE:
MSMg01no406_a22.g1 PHD_FILE: MSMg01no406_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:14 2005
         (357 letters)



>mm_chr3_151734884_151735640
          Length = 757

 Score =  644 bits (333), Expect = 0.0
 Identities = 351/357 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgatcatgaagaaagtataaataatgctacacacttgattccaagtattgccaattat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 agtgatcatgaagaaagtataaataatgctacacacttgattctaagtactgccaattat 260

                                                                       
Query: 61  gtcaccagaattattcctcaaggtcatcttaactgactgattagaaaagattgcaatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaccagaattattcctcaaggtcatcttaactgactgattagaaaagattgcaatctc 320

                                                                       
Query: 121 caaggcttctttatgacaaaatactgttttgtgaagcatctccattaacttttaaaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggcttctttatgacaaaatactgttttgtgaagcatctccattaacttttaaaatgg 380

                                                                       
Query: 181 catgtcagcgttttcttttatataatccagcaagaaggaaatgggcagttgtctttgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 catgtcagcgttttcttttatataatccagcaagaaggaaatgggcagttgtctttgcag 440

                                                                       
Query: 241 cgtcacacccactagtaaacggcagtgataaagcaggaagtggtgagggaagattgaccg 300
           | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 catcacacccattagtaaacggcagtgataaagcaggaagtggggagggaagattgaccg 500

                                                                    
Query: 301 tccataatgtccccacactgatgctgtaagaaaaaacgcaaggtctgatcagcatta 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccataatgtccccacactgatgctgtaagaaaaaacgcaaggtctgatcagcatta 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)