Query= MSMg01no406_d03.b1 MSMg01no406_d03.b1 CHROMAT_FILE:
MSMg01no406_d03.b1 PHD_FILE: MSMg01no406_d03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:25 2005
(249 letters)
>mm_chr3_135492754_135493402
Length = 649
Score = 482 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 1 atcttgttcccttcagttatctacgtattcgttccgccgatacctctactaacttgtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttgttcccttcagttatctacgtattcgttccgccgatacctctactaacttgtata 260
Query: 61 aaatacagtgttaatacggagcttattatatcactcttttgagcagtttggaacccaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatacagtgttaatacggagcttattatatcactcttttgagcagtttggaacccaggg 320
Query: 121 actctagggagctaggctctgctcagctatgcacagtccctaaacttcacgtgttttaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctagggagctaggctctgctcagctatgcacagtccctaaacttcacgtgttttaag 380
Query: 181 atgaatgatcagcttttctgtgctgtgcctcctgtatgtcttttaagttatcctttggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaatgatcagcttttctgtgctgtgcctcctgtatgtcttttaagttatcctttggta 440
Query: 241 ccatttata 249
|||||||||
Sbjct: 441 ccatttata 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_d03.g1 MSMg01no406_d03.g1 CHROMAT_FILE:
MSMg01no406_d03.g1 PHD_FILE: MSMg01no406_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:25 2005
(243 letters)
>mm_chr3_135713041_135713681
Length = 641
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1 gaaccttggtgaaagatgagatgacagaggtgactgagtgggttctgcagctgccctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaccttggtgaaagatgagatgacagaggtgactgagtgggttctgcagctgccctcca 382
Query: 61 tcctctatgggaaacaggaacaaagcgattgtcaccccccctgcccagggtgtgtgggac 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctctat-ggaaacaggaacaaagcgattgtcaccccccctgcccagggtgtgtgggac 323
Query: 121 atgagaagcaagcagttccatacgggcatggaggtcaatgtgtgggccatcgtttgcttc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgagaagcaagcagttccatatgggcatggaggtcaatgtgtgggccatcgtttgcttc 263
Query: 181 gcaccccagcaccagtgtacagaagtccatctcaaggtacttccctgagcaacggaggaa 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 262 gcaccccagcaccagtgtacagaagtccatctcaa-gtacttccctgagcaactgaggaa 204
Query: 241 gac 243
|||
Sbjct: 203 gac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 641
Length adjustment: 9
Effective length of query: 234
Effective length of database: 632
Effective search space: 147888
Effective search space used: 147888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
