BAC Information

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BAC

Clone NameMSMg01-406F12
Chromosome3 (Build37)
Map Location 118,664,849 - 118,665,052
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406F12.T7 (MSMg01no406_f12.b1)MSMg01-406F12.TJ (MSMg01no406_f12.g1)
ACCAG504561AG504562
length742822
length of high quality
(start - end)
209 (319 - 527)204 (70 - 273)
definitionCHROMAT_FILE: MSMg01no406_f12.b1 PHD_FILE: MSMg01no406_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:37 2005CHROMAT_FILE: MSMg01no406_f12.g1 PHD_FILE: MSMg01no406_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAAATTTTGCGGCGCTAAACGACTCACTTATGCGAGAAATCCGCGGAAT
TCCCAGAATATCCTTATTCTGTGGTGTCATAGAATTAAACATTTGCTAAA
CATAAAGCCTTCTGGGGGACTTGTGGAATGCAAATCACATTTATAGTTCA
TCTTTCAACCATTTTGTTCTGAAATTTCTAAGACTATTTCATTATTGGAA
TGTCCCTGTGGTCTACTTCTGCTACTGTTTTGTTAATAAGAACTTATTAA
ATAGTTGAGGAACAATTAACATTAATTGAACATTCATGTGTATTTTCATT
ATGTACTATTATATATTGAACAGACCAAAGTGACTTACCTCAAATTAGAA
TTAATAAATATTTTTATTGGTGATTTTACTTATTTACATTTCAAATGTTA
TCCCCCTTCCCAGTTTTTACTCCGCAATCCCCCTATCCTCTCCCTTTCCG
TGGCTTCTATGAGGGTGCTCCCCACACTCCCAACTCCTTTCTCATCACCC
TACCATTTCCCTATGCTGGGTCATTAAGCCTTCACAGGACCAAGGACATC
CCCTCCCTTTGGCAGATAAGGCCATCCTCTGCTACATATGCATCTGTAGC
CATAGGTCCCTCCATGTGTAATCTTTGGCTGGCAGTTTACTCCCTTGTTA
CTCTGGGCTCTGGATGGTTGATATTGTTAGAAATCAGTCTGGTGGTTCCT
CCCAAAAATACATTTGTAAATACTTCTCCCTGAGTACCCATN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAAACTCA
GAAATCTCCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGAGAGCACC
AACACGCCAGGCTCCGACTTTGTTATCTTAATAGCAAGTTTTATATTTTA
GTTTAGATGTATGAACCTACTGATTAGGATTATCTGTAAGTGATAACACT
TTAGGATACATGATTTATGGAATTAATGGATGGATAGCATATAAACAAAT
GATGCTCATGTTTCTTAGAATAAATGCCTAAATAAAATGGTTGGATTATT
ATTTTTTATACGCTATTTTCATCTTCAGATACTAATATCTTAAACCTTTT
TAGGGGGGTATTTTTAGAATTTTAAAAACCATACCCCCCAATGGAATATT
TTTAACAAATTGGCTTAAAAGAACCCAGAAATAATTTTTTCTTAATAACC
CCTCCCCTTTTATTTTCTAAACCCTAAGAGTGGTCAGAGGGGGTTCCTAC
CAGTTAAAAATTTTTCCAAAAAATTTTTTTTCCCCAAATATCCTAACTCT
TTTTTGGAAACCCCCCCCCCCCTCCGGGGAGAAGCCCCCCCCCTCCTCCC
CCCCGGGTGCTCCTCCCCCCTCTTTGGGTCCTCTTTTCGGGGGGGGCACT
CATTTTTCTTCCCCTCACCCCTTTTCCCCCCACCCCCCTCTCTTTATTTA
TATAAAGGGGGGCGTCTCCCCCCTCTACAAATTACCCCCTCCTTTTTTTT
TTCCATCACCACCCACCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_f12.g1 MSMg01no406_f12.g1 CHROMAT_FILE:
MSMg01no406_f12.g1 PHD_FILE: MSMg01no406_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:37 2005
         (204 letters)



>mm_chr3_118664555_118665158
          Length = 604

 Score =  395 bits (204), Expect = e-114
 Identities = 204/204 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaaactcagaaatctccctgcctctgcctcccaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 actttgtagaccaggctggcctcgaaactcagaaatctccctgcctctgcctcccaagtg 439

                                                                       
Query: 61  ctgggattaaaggagagcaccaacacgccaggctccgactttgttatcttaatagcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgggattaaaggagagcaccaacacgccaggctccgactttgttatcttaatagcaagt 379

                                                                       
Query: 121 tttatattttagtttagatgtatgaacctactgattaggattatctgtaagtgataacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttatattttagtttagatgtatgaacctactgattaggattatctgtaagtgataacac 319

                                   
Query: 181 tttaggatacatgatttatggaat 204
           ||||||||||||||||||||||||
Sbjct: 318 tttaggatacatgatttatggaat 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)