BAC Information

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BAC

Clone NameMSMg01-406G09
Chromosome3 (Build37)
Map Location 82,435,866 - 82,435,980
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
Downstream geneLOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406G09.T7 (MSMg01no406_g09.b1)MSMg01-406G09.TJ (MSMg01no406_g09.g1)
ACCAG504603AG504604
length797769
length of high quality
(start - end)
183 (127 - 309)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no406_g09.b1 PHD_FILE: MSMg01no406_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:41 2005CHROMAT_FILE: MSMg01no406_g09.g1 PHD_FILE: MSMg01no406_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAAGCACCGC
NGGAANCCAAGCTTATCATACACTGAAGGACNTTNCNAGGAGGNTGGAAC
ACTGGCGAAGGCTTATTTATGTCAGAATTCAATCCTTAAAGGCACTTAAA
ATAATACTAAAAGAGAGCATGTGGATCCATACACCAGACTAACGCAGGGA
TAGGGTATGAGTTTATGGGTTATGAGAATGCCTAATTCCAGGAAGTTTTT
TTTCCTTGAAACTCTGCCTCGTGAGTGCTTCCAGGCCTCTTGGCCTGTCA
AGCAGACTTCACTGTTTTTTTTTTAGCACAAGCACGNACCAAAAGGCCCC
GGAACACCCTACTTTATACGATATCCTCATGTTTCATACATTTGCCTGCA
AATTTCTTGGCACCTTTGCCTCTTGATAGTTGAATAGCTCTCCATTGTAT
TGATGTACCATATATATCCATTTCTGTAGTTTGATGGACTTCCTATGCCT
GCCTCCCTGTTTTTGTCTCACTAACATATAAAGCTTGCTGCCATCATTAT
CTTAAGCTGTCTGCTTCTTGACTGCTTCCTCACTGCCTCCTCTTTTTTCT
TCTCTCCCCCTTCACTTACCTTATACCTCTCCCCGCCTTTTCTCGTATCC
CACAATCTTCTCCTCTTGGTTTATCTTTTTTTTTTTTCTCCTCTGCTTCG
TCATCTCCTCTTTTTTTTTCTCTTTTTTCCTCGTCCTTTCTTCTTCTTTT
GTCTATTCTTTTGTTTCTTTATTTGTCTCTCATTTTTCTCGCTTCCN
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACTCTTCCCTCCCCACAGACATC
TCCTCCTCATGTGGGTTGTGGTAATCAAAAGTCCATACAGGTCTCAGGTG
CAGAGATTGCAACCCTGATGGAACCCAGTTTCAGACTGCTCTCTGATTGC
AGGTTCTTCCCCCGAACCCGAAGCCACATGCCCTGGGGTGACATACTGTC
TATAATCCAGGCACTTCCTCCTGTATGGATAGCAAGAGTGGCCAGCAGTC
AGGTGCGGAAGTGTGTTTTTCCTTCTCAGCAGCTAGGAGCCTGAGGAAAG
AGGATGGCTTGTAGGTCAGCTGTCCTGCATAGGGACACCCTGTTTGAGAA
AAAGAAAAGAGGAGAGTGTGTGCTATTGAAGGCTGTACTCCCTTTTTTTT
CTCTTCACTTTCTTTTCTTTGATCTCCTTCTTTATTAACTTACTTTTTTT
TTCCTTTCATCTTCCCCTTCTTTCCTCCCTTTATTTCCTCTCTTTTTTTT
CTATTTTCTTTTTTTTTTTGTTTTTTCCCTCTTCCCTCTCTTTTATTTTC
CCCATCCTTTTTATTAATCTTTTTTCTTCTTATTTCCTCCCCCTTTTTTT
TTTTTTTTTTTTTTCCCTTTTTTCCTCCCCACTTTTATTCCTTCTCTTCT
ACTTTTCTTCACCTATTCTTTCTTTCACACCCTTGATCTCAACTATTTCT
TTCTTTTAATTATTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_g09.g1 MSMg01no406_g09.g1 CHROMAT_FILE:
MSMg01no406_g09.g1 PHD_FILE: MSMg01no406_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:41 2005
         (239 letters)



>mm_chr3_82435611_82436249
          Length = 639

 Score =  223 bits (115), Expect = 1e-62
 Identities = 115/115 (100%)
 Strand = Plus / Minus

                                                                       
Query: 56  tccatacaggtctcaggtgcagagattgcaaccctgatggaacccagtttcagactgctc 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tccatacaggtctcaggtgcagagattgcaaccctgatggaacccagtttcagactgctc 311

                                                                  
Query: 116 tctgattgcaggttcttcccccgaacccgaagccacatgccctggggtgacatac 170
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tctgattgcaggttcttcccccgaacccgaagccacatgccctggggtgacatac 256



 Score =  103 bits (53), Expect = 1e-26
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 5   cttccctccccacagacatctcctcctcatgtgggttgtggtaatcaaaagtc 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cttccctccccacagacatctcctcctcatgtgggttgtggtaatcaaaagtc 210



 Score = 89.7 bits (46), Expect = 1e-22
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 194 cctgtatggatagcaagagtggccagcagtcaggtgcggaagtgtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctgtatggatagcaagagtggccagcagtcaggtgcggaagtgtg 406



 Score = 74.2 bits (38), Expect = 7e-18
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 164 gacatactgtctataatccaggcacttcctcctgtatg 201
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gacatactgtctataatccaggcacttcctcctgtatg 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)