BAC Information

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BAC

Clone NameMSMg01-406N14
Chromosome3 (Build37)
Map Location 24,413,409 - 24,413,952
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548, EG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406N14.T7 (MSMg01no406_n14.b1)MSMg01-406N14.TJ (MSMg01no406_n14.g1)
ACCAG504947AG504948
length7671,191
length of high quality
(start - end)
544 (73 - 616)---
definitionCHROMAT_FILE: MSMg01no406_n14.b1 PHD_FILE: MSMg01no406_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:18 2005CHROMAT_FILE: MSMg01no406_n14.g1 PHD_FILE: MSMg01no406_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGATCTTTCCTTTTGTGGGTGCACATGGCATATGAAATACTG
CTCTAAACGTTAAAAACAGATAGATTCACTGACACCTGTCATATCCTTTT
TAATAATCTTTCTAAGAGAGAGAGAAAAAGAGAATTTATAACAGCAGAGA
TAAACAAAGCTAAGCTCACATACTTTCATTGGTAAAAAATCTGACAGATT
TACTTGTGAGTGTTTGCAGGACAGAGTGCAAAATCAAGAGGCAGTTTTGT
CATCAACTTTTCTTGGTATCTGTTTAGTCTATGGATTTATGTCATCTAGT
TCAATGTTTGTTGGCCAGATCCTTAGAAACAAGACATTTTCCTCACACCC
TCTATGCTCCTTTGAAACTTTTTGATAACATAATACCACATAAAGATCTT
TATGTTTGAAGTTATACGTGATCTAGGAATTCCATCTGTAAAACTGAAAA
AGTGTGTGCTGTCAAAGAAGCACACATGATCACCACATTTTGATACCTGA
AGTGGTAGCATGATAATAACTGTGTAAAACAGCGACTTCCTTCTCTCAAA
ATAATTACGGCTCTCTAGAAACCAGCATCTGTGCTGCCAGATGTTTCTGT
CAAACACATAAACAAAGGGGTTTGAACAACGTGGCTGTCTGGGCTGCAAT
CCACAAATCTATTAATTACTGGCAGAAAGGCGGGGTTTTCTTGGAGCCCC
CCGGGGTAATTACCCTG
NCATAAATACAACCATACCAGAGGAGTGGTGTGTGGTTCTCTATACACAA
AAAGGTTGATAGAACAGATAGAATATCAATAATATTATTAGAAGCGCTGC
TGGTTGAGCCTCGCGTCTCTTTTAATTCTCCGATCTTATTATGCCCTCAC
TCCCACATATTATCTCACATATGTCCAGTACCTCCGTACGCTACTTAACC
ACGACTCGCGCCCGCTGCATTATTATATTTCAATGATATATACGAAACCC
CCACCATAAATATCTATCAGCTTATACTACAATAATAACAAAAAAAACGA
AAAATAATAGAATTAACTCTGACTCCTCCGTATGAGACGATCGCCGGATG
TCCCACATCATTGAACACCTAATCCTCACTCTTCGATAATTGTACTCTTA
TCCCCCTCCCGCTTTTAATAAGACTCTACCAAACATTATACAGCGAGGCA
GCGCATAATTAACAGGAATACCACGAATAGCCGACAGAGTAGTCACACCA
TCATTGCTCCGCGCGGGTTGCCTGTAGAGGGCGCGCGCGCGCCGTGCCGC
GCGTATATCCTTCTACATGACAGTCAAAACGCACGCAAGAGAGCGAGATA
AGGATGACGGTGATATGCGAACGACTAATGCTCCCATATCGAAACTTCGA
CCGCCCTGGATATACCGCGCGCGTCTATTTCGCTCTGCAGATATATCACA
CGCAGTTATGTAACTACGCAGAGAGAGACGCGCTACAAGGCGCCGCGAAT
CCGGATTACGACTATAGCATACGCGATACCGCACTCCCATCTCATCGCTA
TCCCCATTCATATCCCTAATTCACGGTTAACTAGAGGTGAGGTACGAGTG
AGAGAGTAGCGTTGATCGCGTGCACGCAGACTCTATACAATATGATTTGA
CCGCCGCTAGGATACGTAAGCACGCACGCCAGAATTTCTCAACCCTATAC
CGCAGATAACATTATCAACTGCGAAGAAGTATGTATGAGTCGAAACAGTC
CGCGATGCATGATAAGTTACACGACATACCATCACCCACTTNTCGTCCAT
AATTANCACTCTCAACACACCATCAGTAATTCCGTTCCCTCACCACCACT
ACGCGAGTAAACTATCCGCACGTACCCTAATTATGCTCGAGTAGAGACGT
TTGTATATATCCGAGGCTATGCCATAGTGATCGATGAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_n14.b1 MSMg01no406_n14.b1 CHROMAT_FILE:
MSMg01no406_n14.b1 PHD_FILE: MSMg01no406_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:18 2005
         (544 letters)



>mm_chr3_24413209_24414152
          Length = 944

 Score = 1006 bits (520), Expect = 0.0
 Identities = 538/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggtgcacatggcatatgaaatactgctctaaacgttaaaaacagatagattcactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggtgcacatggcatatgaaatactgctctaaacgttaaaaacagatagattcactga 260

                                                                       
Query: 61  cacctgtcatatcctttttaataatctttctaagagagagagaaaaagagaatttataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctgtcatatcctttttaataatctttctaagagagagagaaaaagagaatttataac 320

                                                                       
Query: 121 agcagagataaacaaagctaagctcacatactttcattggtaaaaaatctgacagattta 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgagataaacaaagctaagctcacatactttcattggtaaaaaatctgacagattta 380

                                                                       
Query: 181 cttgtgagtgtttgcaggacagagtgcaaaatcaagaggcagttttgtcatcaacttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtgagtgtttgcaggacagagtgcaaaatcaagaggcagttttgtcatcaacttttc 440

                                                                       
Query: 241 ttggtatctgtttagtctatggatttatgtcatctagttcaatgtttgttggccagatcc 300
           |||||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtaactggctagcctatggatttatgtcatctagttcaatgtttgttggccagatcc 500

                                                                       
Query: 301 ttagaaacaagacattttcctcacaccctctatgctcctttgaaactttttgataacata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagaaacaagacattttcctcacaccctctatgctcctttgaaactttttgataacata 560

                                                                       
Query: 361 ataccacataaagatctttatgtttgaagttatacgtgatctaggaattccatctgtaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataccacataaagatctttatgtttgaagttatacgtgatctaggaattccatctgtaaa 620

                                                                       
Query: 421 actgaaaaagtgtgtgctgtcaaagaagcacacatgatcaccacattttgatacctgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgaaaaagtgtgtgctgtcaaagaagcacacatgatcaccacattttgatacctgaag 680

                                                                       
Query: 481 tggtagcatgataataactgtgtaaaacagcgacttccttctctcaaaataattacggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tggtagcatgataataactgtgtaaaacagcgacttccttctctcaaaataattatggct 740

               
Query: 541 ctct 544
           ||||
Sbjct: 741 ctct 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)