Query= MSMg01no406_p24.b1 MSMg01no406_p24.b1 CHROMAT_FILE:
MSMg01no406_p24.b1 PHD_FILE: MSMg01no406_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:31 2005
(534 letters)
>mm_chr3_114010304_114011237
Length = 934
Score = 868 bits (449), Expect = 0.0
Identities = 458/461 (99%)
Strand = Plus / Minus
Query: 74 gattcgacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagcagatgct 133
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gattccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagcagatgct 875
Query: 134 ggcaaggatgtggagaaaggggaacactcctccattgttggtgggattgcaagcttgtac 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ggcaaggatgtggagaaaggggaacactcctccattgttggtgggattgcaagcttgtac 815
Query: 194 aaccgctctgtaaatcagtctggcagttcctcagaaaattggacatagtactactggttg 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 814 aaccgctctgtaaatcagtctggcagttcctcagaaaattggacatagtactactggagg 755
Query: 254 acataggaagacctgtactgactgcttgcaccaaccaagatcaactagttgaagcccttg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 acataggaagacctgtactgactgcttgcaccaaccaagatcaactagttgaagcccttg 695
Query: 314 tgaatttttaattctgctccgattctttaagttcttattataaactgacagtataacgga 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgaatttttaattctgctccgattctttaagttcttattataaactgacagtataacgga 635
Query: 374 gaactaaagagaaaaaattcatgatagacattagatagttttatgtacattgactcttca 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaactaaagagaaaaaattcatgatagacattagatagttttatgtacattgactcttca 575
Query: 434 taagaaataataaaattttattcatatatatgtgcatataatttttagttttaaatttgt 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 taagaaataataaaattttattcatatatatgtgcatataatttttagttttaaatttgt 515
Query: 494 caagcaaaataaattacatgaaaatatgattagctctgttt 534
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 caagcaaaataaattacatgaaaatatgattagctctgttt 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_p24.g1 MSMg01no406_p24.g1 CHROMAT_FILE:
MSMg01no406_p24.g1 PHD_FILE: MSMg01no406_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:31 2005
(523 letters)
>mm_chr3_113840518_113841440
Length = 923
Score = 1006 bits (520), Expect = 0.0
Identities = 523/524 (99%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 1 caaacatagagttttatgtcttccttatgttaccaagcaaaaatgaccaccatattcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacatagagttttatgtcttccttatgttaccaagcaaaaatgaccaccatattcaag 260
Query: 61 accagttagaaaatgtaaataaagcttttcatgttataggatacaataaagtttaaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagttagaaaatgtaaataaagcttttcatgttataggatacaataaagtttaaacat 320
Query: 121 aaaaatagttttattgaagaggtattagtacaaatgaattaacattaattaaggacacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatagttttattgaagaggtattagtacaaatgaattaacattaattaaggacacat 380
Query: 181 attttaggctgtttctgcactttgtgaaaatatgattttcatttagagttggagaaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttaggctgtttctgcactttgtgaaaatatgattttcatttagagttggagaaaatg 440
Query: 241 tatgaactattaaaatataatctatttttcagaaactaccctttaacttctatttaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgaactattaaaatataatctatttttcagaaactaccctttaacttctatttaatta 500
Query: 301 taagaaatatagtttaatattttagttttgaatttaatactaaaatattttttatcaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagaaatatagtttaatattttagttttgaatttaatactaaaatattttttatcaatt 560
Query: 361 catgcttgcaggctttcagatgtcactgtaagttcactttcaaatgcaagaacggacctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgcttgcaggctttcagatgtcactgtaagttcactttcaaatgcaagaacggacctt 620
Query: 421 atgtagtgactaaaatacaattgatcgtatttttttt-attaaaagctttcaaagcaagc 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 atgtagtgactaaaatacaattgatcgtatttttttttattaaaagctttcaaagcaagc 680
Query: 480 acatgctttttatttaaatattaccatctatgaccaaatcaatg 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatgctttttatttaaatattaccatctatgaccaaatcaatg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
