Query= MSMg01no407_i14.b1 MSMg01no407_i14.b1 CHROMAT_FILE:
MSMg01no407_i14.b1 PHD_FILE: MSMg01no407_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:12 2005
(536 letters)
>mm_chr3_132425882_132426817
Length = 936
Score = 944 bits (488), Expect = 0.0
Identities = 521/534 (97%), Gaps = 7/534 (1%)
Strand = Plus / Plus
Query: 5 gaattctcagttttacacttcacgaccttatgtgatgcagagtttgagggaatgcattct 64
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattct--gttttacacttcacgaccttatgtgatgcagagtttgagggaatgcattct 264
Query: 65 ctgagaacagaaggctttggatacaaaaacaaacactcatttgctcaaaagcatagacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgagaacagaaggctttggatacaaaaacaaacactcatttgctcaaaagcatagacca 324
Query: 125 attttgtcattttagctaaaacattttcatttatgaatcagaggtattagaaatataaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attttgtcattttagctaaaacattttcatttatgaatcagaggtattagaaatataaac 384
Query: 185 ataaatgcttagccaatgaaaaggtaacatggtattattgctgtgacttaggacagccat 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaatgcttagctaatgaaaaggtaacatggtattattgctgtgacttaggacagccat 444
Query: 245 cactggaataaacagtccccagctctgatgtttccattgttcagtacctaatacagcaaa 304
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 445 cactggaataaacagtccccagctctgatgtttccgttgttcattacctaatacagcaaa 504
Query: 305 agaactatcaagtaattataggcgctctaaagcctttgccaagttaaaatagacttgggc 364
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct: 505 agaactatcaagtaattataggctctctaaagcctttgccaagttaatatagacttgtgc 564
Query: 365 aagtttcaaagaattttagggatttttaactatacaaataaaaagtgttcagtattcaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtttcaaagaattttagggatttttaactatacaaataaaaagtgttcagtattcaat 624
Query: 425 taatagattctgtcatttaggaataaatgtaaataaaataagttataatgatata--ttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 taatagattctgtcatttaggaataaatgtaaataaaataagttataatgatatattttt 684
Query: 483 tttataagacaggatctcatttttccctactagccaggaacttgaaatttagcc 536
| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 t--ataagacaggatctcatttt-ccctactagccaggaacttgaaatttagcc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_i14.g1 MSMg01no407_i14.g1 CHROMAT_FILE:
MSMg01no407_i14.g1 PHD_FILE: MSMg01no407_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:12 2005
(413 letters)
>mm_chr3_132577887_132578700
Length = 814
Score = 692 bits (358), Expect = 0.0
Identities = 400/414 (96%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 1 cttttggcatataaattacatcacctggagattctaagcgcgcaaacataccatgtggtc 60
||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct: 614 cttttggcatataaattacatcacctggagattctaagcacgcaaacatatcgtgtggtc 555
Query: 61 ataa-ttttttttctagaaattaagacattcttctaaatgaacacttcatattaatttca 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ataatttttttttctagaaattaagacattcttctaaatgaacacttcatattaatttca 495
Query: 120 gaagaaataatttataagtattgattactaactagttttggattggtttctgaaacatat 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 494 gaagaaatcatttataagtattgattactaactagttttggattggtttctgatccatat 435
Query: 180 gttgatttcctcatccaaggaaagaccagcatcgaatcacgatgtagagccagacgttgt 239
|||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||| ||||
Sbjct: 434 gttgatttcctcatccaaggaaagacgagcatagaaccacgacgtagagccagacattgt 375
Query: 240 taagtctgggtgtgtactgcttacagcagcacgccgattgccgagctgagcacactgtga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 taagtctgggtgtgtactgcttacagcagcacgccgattgccgagctgagcacactgtga 315
Query: 300 gtgttttcaccttaactagggtattatcaacaaccttgctttctaaaagttccaacccca 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtgctttcaccttaactagggtattatcaacaaccttgctttctaaaagttccaacccca 255
Query: 360 gaaacaaatgtgcctttgatttagaaggttaagagaccgataaacagcgtgttg 413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 254 gaaacaaatgtgcctttgatttagaaggttaagggaccgataaacagcgtgttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 814
Length adjustment: 9
Effective length of query: 404
Effective length of database: 805
Effective search space: 325220
Effective search space used: 325220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
