BAC Information

Click to search

BAC

Clone NameMSMg01-408D13
Chromosome3 (Build37)
Map Location 116,509,465 - 116,509,753
singlet/doubletsinglet
Overlap geneAgl
Upstream geneDph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3
Downstream geneLOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408D13.T7 (MSMg01no408_d13.b1)MSMg01-408D13.TJ (MSMg01no408_d13.g1)
ACCAG505990AG505991
length761761
length of high quality
(start - end)		289 (323 - 611)541 (71 - 611)
definitionCHROMAT_FILE: MSMg01no408_d13.b1 PHD_FILE: MSMg01no408_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:08 2005CHROMAT_FILE: MSMg01no408_d13.g1 PHD_FILE: MSMg01no408_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTC
ATCCAGTTGACTGATTTTTGTCTTGATGCATAAAAAAAACTTCCTCCTTG
TATTTTACAAGTTATATTTATAAATTATCAGTGGACTGTTTTCAGTATTG
AATGTAAAGCATCAGTTAGCGTGTCTGATAGTCCTGCAAATTGATCTTTG
ATCTTACCTTTAGTTACATTTTTCTGTCATGCTGGGGCTTGAACCCAAGA
CTTTGCTTGTATTAGGCAAGTACTATACCACTTAGCTATATCCCTAGCTC
AATGTAGTTCTTTAAGTGTTGGCTCCAACATGTTTCAACATCACCGAAGA
GGTTTTTCCACTTTTTATTTGGCTTCATCTTCTACTTGCTTGAGAGGCTC
CTGATAGGGTTAGCAAGCTCACTACGCCTTTTGCTGTACTCTACTCTCCC
AGCGCTGAAGCTCAATAGAGGAAAAGAGTTTGCTCTGAAAAGCCACCCTA
CAGATATATGCAAAGCTACATTATATATGATTTCACGAGTTATAACAATA
AATGCTATTACTAATAACATGCTCAATCTTTTAACTGCACACGCACTCTC
TACCACTTCTTTTTCTCCCTAAGGTAGGGACTGAACCCAGGCTAGGGACA
AGTTCTACCCACGAGGGACTTCCTATAACTGCAATGTCTGCCCCCCGTGT
CCGGTGGTCGTCTGCACCAAAAGAACTGAACTTCCTTTTTGTACCGGGAA
AGGGGCATTCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCTTCTGAAACTATGAGCAAGCCCCCAAT
AAATCTTGTATAAGTTGCTTTGGCCTTGGTGTCTCTTCTCAGCAGCAGAG
CAGTAACTGAGACAGAGCCCTTCCTATTTTCCTCATGCTTATCCTTGCTG
ACGCCCATCTGTATTTACACATATTTAACAGTTAGAGGCCACAGTTCCCA
TATGAAAGAGAATATACAGTATTTGTCTTTCTGAGCCTGGGTTACTTTGC
ATGAAACAATGTTTTCTAGTTCCACTTATTTTCCTGCAGATTTCCTAACT
TTGTTATTCAGTTATCCACAACTGAATAAAATGCCACATTTTGTTTATCC
ATTGATCTGTTGACAGACATGGAAACTGATTCCATGTTCTCGCTACTATG
AAAAGAACTGCATTAAGCATGGATAGACAAGTGTCCTAAGAGTGGGATCT
GGCATCCTTCAGGTGTATCTCCAGGAGCAGAACGGCTGGATCATATGGTA
ATTCTATTTTTTTGTAACAAACCTCCCCATTTGATTTCTCCTATGGNCAC
ACCAGTTCACAATCCCACCACCAGTGTCAGGTGTTTCCTCTTCCCACATC
TTTCCTAGATTTGTTGGCATTTCTCCACTTTCTTGATAAGAACCAGTTCC
TCCCCCTGATTTGAATTTCCCCGATGGCAGAGAAGTTTGCCACCTTTTTC
TAAAACCGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_d13.b1 MSMg01no408_d13.b1 CHROMAT_FILE:
MSMg01no408_d13.b1 PHD_FILE: MSMg01no408_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:08 2005
         (289 letters)



>mm_chr3_116509265_116509953
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaacatgtttcaacatcaccgaagaggtttttccactttttatttggcttcatcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaacatgtttcaacatcaccgaagaggtttttccactttttatttggcttcatcttc 260

                                                                       
Query: 61  tacttgcttgagaggctcctgatagggttagcaagctcactacgccttttgctgtactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttgcttgagaggctcctgatagggttagcaagctcactacgccttttgctgtactct 320

                                                                       
Query: 121 actctcccagcgctgaagctcaatagaggaaaagagtttgctctgaaaagccaccctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctcccagcgctgaagctcaatagaggaaaagagtttgctctgaaaagccaccctaca 380

                                                                       
Query: 181 gatatatgcaaagctacattatatatgatttcacgagttataacaataaatgctattact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatatgcaaagctacattatatatgatttcacgagttataacaataaatgctattact 440

                                                            
Query: 241 aataacatgctcaatcttttaactgcacacgcactctctaccacttctt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacatgctcaatcttttaactgcacacgcactctctaccacttctt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |