BAC Information

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BAC

Clone NameMSMg01-408F02
Chromosome3 (Build37)
Map Location 60,357,883 - 60,358,423
singlet/doubletsinglet
Overlap geneMbnl1
Upstream geneEG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408F02.T7 (MSMg01no408_f02.b1)MSMg01-408F02.TJ (MSMg01no408_f02.g1)
ACCAG506064AG506065
length726737
length of high quality
(start - end)
541 (73 - 613)152 (78 - 229)
definitionCHROMAT_FILE: MSMg01no408_f02.b1 PHD_FILE: MSMg01no408_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:15 2005CHROMAT_FILE: MSMg01no408_f02.g1 PHD_FILE: MSMg01no408_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACTAATAAAAAACACTGTTAACTTTACTCATGTTCTGTTAAG
ATTGCATCATAGACACAGATCCCTTGAAAAGGGCATCACAGCCCAGAGAT
AGTTAACTTAGAACCATTCTAGAACAAAAATTATTTTAAAAATATTTTTA
CTGAGGACAAAGAAACATTTAAAATAAACAATAAAAATTTGAAGCTGGGC
TTAGTGGCAGTACTGTAATCCCAACTATGTGTGAGGTGAGGTAGGAAATT
CAAAGCCTGCATTGGTCTACAGAGCAGATTCTCCAGCCTGATCAACTTAG
CCAAAAGCCTTGTATCAAAGTTAAAAATAAAATATTTTTTTAAGTTTTGA
GGTTAGACAATGATTGTTTAGTGTATTCAAACCCTAGATATGATACCTAC
AACCCCTACAGACACATATAACAACAAAAAAAGAAAGAAGATAATAACCC
AGAGATTTGATTATTTTAAAACTAACATTATCTTTGTAAAAATAATATTT
TATAGGTCCTTACATTGTATTGAAATTATCCTCCTAATAATATTTAAATT
ATAAATTTTCCATTTCAAACCTACATTGCATTTAGGGTTTCATATTTCCA
TAGTTTTTTTTTCTGCTAGTAGTTCATAAACGCTGACTCCCTTGAAGGCG
GGTTAGTTTCTACCGAAGGTTTTTTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTGGCCTTGAATGCAAGAT
AAATCCACTTGCCTCTTCCTCCCAAGTGCTGGCATCAGATGTATGTACTA
TTGTGCCTGGATAAAAATCTTTTTGTTTTAATGATGTCCCACAGAGTAAC
AAAGTTGTTAAATAGTTGATCTAAAACATACACAATACATGAAGAATTGT
ATGCCTAGAATAATGAAATCGTCATAGCTTACTTGATTATATACATGTAC
AGAACAGTAAGAACAAACACTTATATTGGCATGATGGTACATTCCTGACA
TCTCGGCTATTGAGTTGAAAGTGTGAGCATCCCAAGCTCAGGGTCACTCT
GCGCTACATGATACCCTCCTTCGAAAGGCATAATAATGCTAACACATACT
CGAAACAGAATCGCTCATAGATTGCAACATTCTGGATAAAATTAATTCTT
TACCTCAGTCACCTCCTCTCTTTTTTACCTTTACGGGTTATCTGCACTTA
CTTGCGACTGTGTTTATTGCTTTCTTTGATATTCCCCTCTTCATATTTTT
CTGTCCTTCCTTTTTTTCCTATTTGACAACTCCCATTAATACTGTTCCTC
ACTCTATCCCATTTATTACTCCCTTCACTTACAACTTCCCTCTTCCCTCA
CACTTTCTTCATTTATTCCCTTTTCCTCCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_f02.b1 MSMg01no408_f02.b1 CHROMAT_FILE:
MSMg01no408_f02.b1 PHD_FILE: MSMg01no408_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:15 2005
         (541 letters)



>mm_chr3_60357683_60358623
          Length = 941

 Score =  971 bits (502), Expect = 0.0
 Identities = 532/542 (98%), Gaps = 2/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttaactttactcatgttctgttaagattgcatcatagacacagatcccttgaaaagg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ctgttaactttactcatgttctgttaagattgtatcatagacacagatcccttgaaaagg 260

                                                                       
Query: 61  gcatcacagcccagagatagttaacttagaaccattctagaacaaaaattattttaaaaa 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatcacagcccagaggtagttaacttagaaccattctagaacaaaaattattttaaaaa 320

                                                                       
Query: 121 tatttttactgaggacaaagaaacatttaaaataaacaataaaaatttgaagctgggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttactgaggacaaagaaacatttaaaataaacaataaaaatttgaagctgggctt 380

                                                                       
Query: 181 agtggcagtactgtaatcccaactatgtgtgaggt-gaggtaggaaattcaaagcctgca 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 agtggcagtactgtaatcccaactatgtgtgaggttgaggtaggaaattcaaagcctgca 440

                                                                       
Query: 240 ttggtctacagagcagattctccagcctgatcaacttagccaaaagccttgtatcaaagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtctacagagcagattctccagcctgatcaacttagccaaaagccttgtatcaaagt 500

                                                                       
Query: 300 taaaaataaaatatttttttaagttttgaggttagacaatgattgtttagtgtattcaaa 359
           ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 501 taaaaataaaatatttttt-aagtgttgaggttagacaatgattgtttagtatattcaaa 559

                                                                       
Query: 360 ccctagatatgatacctacaacccctacagacacatataacaacaaaaaaagaaagaaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccctagatatgatacctacaacccctacagacacatataacaacaaaaaaagaaagaaga 619

                                                                       
Query: 420 taataacccagagatttgattattttaaaactaacattatctttgtaaaaataatatttt 479
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taataacccagagacttgattattttaaaactaacattatctttgtaaaaataatatttt 679

                                                                       
Query: 480 ataggtccttacattgtattgaaattatcctcctaataatatttaaattataaattttcc 539
           |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 atagttccttacgttgtattgaaattatccttctaataatatttaaattataaattttcc 739

             
Query: 540 at 541
           ||
Sbjct: 740 at 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)