Query= MSMg01no408_g04.b1 MSMg01no408_g04.b1 CHROMAT_FILE:
MSMg01no408_g04.b1 PHD_FILE: MSMg01no408_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:21 2005
(490 letters)
>mm_chr3_100684252_100685141
Length = 890
Score = 835 bits (432), Expect = 0.0
Identities = 468/486 (96%), Gaps = 10/486 (2%)
Strand = Plus / Minus
Query: 5 gaattcactgaattactccccatccataggaaatatgaggagaataaaaccagtgagaac 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gaattcactgaatgaatccccatccataggaaatatgaggagaataaaaccagtgagaac 605
Query: 65 ctcagccatcacgaagaggaaggcttgctttgcatccagccagagtcaacaaatgcttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ctcagccatcacgaagaggaaggcttgctttgcatccagccagagtcaacaaatgcttgt 545
Query: 125 tacatgaataaataaggagttaagtgactgaacagaacttaatgtactcaaatgtacaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tacatgaataaataaggagttaagtgactgaacagaacttaatgtactcaaatgtacaaa 485
Query: 185 cacatcctggtgcaaggaacattacatagcctggcgcgatgcaattctccaggcattctg 244
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 484 cacatcctggtgcaaggaacattacgtagcctggtgcgatgcaattctccaggcattctg 425
Query: 245 accaccagaggctcctaggtggcaggtataaaagggacaagagtccctttgagatgggtt 304
||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||
Sbjct: 424 accaccagaggctcctaggtgacaggtagaaaagggacaagagtcccttttagataggtt 365
Query: 305 agaagccactgtctgttgatcgagaattctgtgactgacacagatttaaacagtctcatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agaagccactgtctgttgatcgagaattctgtgactgacacagatttaaacagtctcatt 305
Query: 365 ggcctccaaggttgtccccaaactcctcagaaattggaagacaggggaatttgctgaaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggcctccaaggttgtccccaaactcctcagaaattggaagacaggggaatttgctgaaaa 245
Query: 425 tacatagtttgctaaagaggctaccctagcttggtttctgttgctgtaataaaacagtgt 484
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 244 tacatagtttgctaaagaggctaccctagcttggtttctg----------aaaacagtgt 195
Query: 485 ccagaa 490
||||||
Sbjct: 194 ccagaa 189
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_g04.g1 MSMg01no408_g04.g1 CHROMAT_FILE:
MSMg01no408_g04.g1 PHD_FILE: MSMg01no408_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:21 2005
(428 letters)
>mm_chr3_100505436_100506263
Length = 828
Score = 797 bits (412), Expect = 0.0
Identities = 424/428 (99%)
Strand = Plus / Plus
Query: 1 ttcattttctctgttaacaagacctttttatctctatgtcacattcagacatggagtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattttctctgttaacaagacctttttatctctatgtcacattcagacatggagtttg 260
Query: 61 tcttgtttttacatctccacattccctactctaagttacccatagattagaatctgggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgtttttacatctccacattccctactctaagttacccatagattagaatctgggat 320
Query: 121 ggaacctggtcacataacgaaccctacagtgcttcattagaaacatacaactgccaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacctggtcacataacgaaccctacagtgcttcattagaaacatacaactgccaatga 380
Query: 181 tagcaccacccatcttgaacctttctggaggcctctgaggagaagttagttttcaggctt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcaccacccatcttaaacctttctggaggcctctgaggagaagttagttttcaggctt 440
Query: 241 aggtgatatgtaccaccaaccacaggcagcactctactcttagtagctgccaaaggtgga 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgacaagtaccaccaaccacaggcagcactctactcttagtagctgccaaaggtgga 500
Query: 301 atgggcaccttgcttttctgaccactgacagtcataagctctaacatctgggatggagga 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgggcaccttggttttctgaccactgacagtcataagctctaacatctgggatggagga 560
Query: 361 attacccatgagactgtccataaatgaacaacaatacaaagaaccaagacttacatttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attacccatgagactgtccataaatgaacaacaatacaaagaaccaagacttacatttaa 620
Query: 421 taattggc 428
||||||||
Sbjct: 621 taattggc 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
