Query= MSMg01no408_i08.b1 MSMg01no408_i08.b1 CHROMAT_FILE:
MSMg01no408_i08.b1 PHD_FILE: MSMg01no408_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:31 2005
(468 letters)
>mm_chr3_8214252_8215118
Length = 867
Score = 828 bits (428), Expect = 0.0
Identities = 455/464 (98%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 5 gaattcacctttactgctcgatgctcatatatgatccctgccggcaatgtgctgtttgtt 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gaattcacctttactg-ttgatgctcatatatgatccctgccggcaatgtgctgtttgtt 609
Query: 65 ttcactcaggtacataaccagggagaggagagcttcgaccaggattctgggtgcggacag 124
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttcgctcaggtacataaccagggggaggagagcttcgaccaggattctgggtgcggacag 549
Query: 125 gtgcctgcttctgggctcaggggcttagtagatggtatttatattccctgcagactcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtgcctgcttctgggctcaggggcttagtagatggtatttatattccctgcagactcctg 489
Query: 185 cctgggcactccaggtagggagaggaactagtgtggtttctgtcttgggataacagtagt 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cctgggcactctaggtagggagaggaactagtgtggtttctgtcttgggataacagtagt 429
Query: 245 atcctaagtcttttcataattgagtttctatcctttatgtcaattgctttgtcgagatca 304
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 428 atcgtaagtcttttcataattgagtttctatccaaaatgtcaattgctttgtcgagatca 369
Query: 305 tcttggcttttcaacaggatggagagctctttatccatataatgcaaatcaagaggctgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcttggcttttcaacaggatggagagctctttatccatataatgcaaatcaagaggctgc 309
Query: 365 ccaaagactcttatcaccctgtgcaccacatcttcatattttataggccagactgttata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ccaaagactcttatcaccctgtgcaccacatcttcatattttataggccagactgttata 249
Query: 425 atttgtctctccccattgtgttgacacttgattctgacatcact 468
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atttgtctctccccattgtgttgacacttgattctgacatcact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_i08.g1 MSMg01no408_i08.g1 CHROMAT_FILE:
MSMg01no408_i08.g1 PHD_FILE: MSMg01no408_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:31 2005
(448 letters)
>mm_chr3_8037736_8038582
Length = 847
Score = 783 bits (405), Expect = 0.0
Identities = 434/445 (97%), Gaps = 5/445 (1%)
Strand = Plus / Plus
Query: 5 cttatggcccagatataaagaggttggtatacaaggcaaacatgtgagacaacaatgtgt 64
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 cttatggcccagatataaagaggttggtatacaaggcaaacatgtgagacaataatgtgt 264
Query: 65 gtaaaagctctgagatcaaaacatccttctgccc--accctattgtttaagaacggcttg 122
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 265 gtaaaagctctgagatcaaaacatccttctgcccccaccctattgtttaagaacagcttg 324
Query: 123 ctggtaaactccccctgatgttcaacagtctgaacttagacagagacctgacttctatct 182
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ctggtaaactccccctgatgttcaacagtctgaaattagacagagacctgacttctatct 384
Query: 183 ttgtgtttgtcactaagaaatgttttgactttaagtgcttcataaatcacaacctctgtt 242
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 385 ttgtgtttgtcactaagaaatgttttgactttaagtgcttcataac-cacaacct--gtt 441
Query: 243 tctttctttaaaataaacagaattggtagccatttttaaaaagatgactcaaccagtggt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 tctttctttaaaataaacagaattggtagccatttttaaaaagatgactcaactagtggt 501
Query: 303 ggtttttgttcccacacctgacagtttgaatttagtcacaagtgcccacaaaatggaagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggtttttgttcccacacctgacagtttgaatttagtcacaagtgcccacaaaatggaagg 561
Query: 363 agaaaaagacccactgcaggttgtcctttgacccctccatgctgccatgaaacacccagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaaaaagacccactgcaggttgtcctttgacccctccatgctgccatgaaacacccagg 621
Query: 423 tatgcatgcatgtgtgagcacatgt 447
||||||||||||||||||||||||
Sbjct: 622 catgcatgcatgtgtgagcacatgt 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space: 366606
Effective search space used: 366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
