Query= MSMg01no408_k08.b1 MSMg01no408_k08.b1 CHROMAT_FILE:
MSMg01no408_k08.b1 PHD_FILE: MSMg01no408_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:41 2005
(512 letters)
>mm_chr3_114149579_114150490
Length = 912
Score = 930 bits (481), Expect = 0.0
Identities = 502/511 (98%), Gaps = 9/511 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaagatggttc-c-aatacttgagtgaattcaagaatataaatggaaccaaagt 62
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattcaaagatgg--cacaaatacttgagtgaattcaagaatataaatggaaccaaagt 502
Query: 63 gaattcaagaatataaatggaaccaaataaagcaaggaagtcagtatatgataggaaagg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaattcaagaatataaatggaaccaaataaagcaaggaagtcagtatatgataggaaagg 442
Query: 123 ggaatttaataaaaaagtggaaatagtagacagactcttcatcttactatcatttctact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatttaataaaaaagtggaaatagtagacagactcttcatcttactatcatttctact 382
Query: 183 gttgactgtgttttaaaaaaatacacatccagcctccaaaatacagagtgatgattttat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgactgtgttttaaaaaaatacacatccagcctccaaaatacagagtgatgattttat 322
Query: 243 gatattttactatcctatatcagaatgttatattccctttaaaacaaaacacaccatgtt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattttactatcctatatcagaatgttatattccctttaaaacaaaacacaccatgtt 262
Query: 303 aaaattttcaagtagaaacttttttctgaccatcaatataaaggttcaacttaaatttcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaattttcaagtagaaacttttttctgaccatcaatataaaggttcaacttaaatttcc 202
Query: 363 tcctcctcctcttcctcctcctgctcctcctcctcctccatctctctctctctccccctc 422
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcctcctcttcctcctcctg---ctcctcctcctccatctctctctctctccccctc 145
Query: 423 cctccctgtcccctctccttgccccctctcatacacacaaacacagacacacactttttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cctccctgtcccctctccttgccccctctcatacacacaaacacagacacacactttttc 85
Query: 483 ctcacattttttg-tttactttccttgaagt 512
|||||| |||||| |||||||||||||||||
Sbjct: 84 ctcaca-tttttgttttactttccttgaagt 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_k08.g1 MSMg01no408_k08.g1 CHROMAT_FILE:
MSMg01no408_k08.g1 PHD_FILE: MSMg01no408_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:41 2005
(511 letters)
>mm_chr3_113983752_113984662
Length = 911
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%)
Strand = Plus / Plus
Query: 1 attggttcagaagacaatttcctgatcagaaaaacaatggctcatgctctaagattacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggttcagaagacaatttcctgatcagaaaaacaatggctcatgctctaagattacta 260
Query: 61 gttgataaacgggacctcatgaaactgcaaagcttctgataggcaaaggacactgtcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgataaacgggacctcatgaaactgcaaagcttctgataggcaaaggacactgtcaat 320
Query: 121 agaacaaattgaaagcctttagattgggaaaggattttcattaaccctacatctggcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacaaattgaaagcctttagattgggaaaggattttcattaaccctacatctggcaga 380
Query: 181 gggctaatatccaaaatttacaaagaatccaatattatttttattttaaggatttgtaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gggctaatatccaaaatttacaaagaatccaatattatttttattttaagaatttgtaga 440
Query: 241 tattaaaaggcctatttcttattaaagaaaaacacagaattattagtaaaattaattttt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tattaaaaggcctatttcttattaaagaaaaacacagaatgattagtaaaattaattttt 500
Query: 301 taatattctatccactttgcaatttttaaaaattgtattactaaaatataaaatttgaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatattctatccactttgcaatttttaaaaattgtattactaaaatataaaatttgaaa 560
Query: 361 ttaaaaatattatttgtatcacatttgctatttaggatatgccttgtatcctgttttagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaaaatattatttgtatcacatttgctatttaggatatgccttgtatcctgttttagt 620
Query: 421 tcaaattacacatgtatatttagctttatatagaaatatttcatgcctttgattttattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaattacacatgtatatttagctttatatagaaatatttcatgcctttgattttattg 680
Query: 481 gtgtatattagaagacattaaaataagcctc 511
|||||||||||||||||||||||||||||||
Sbjct: 681 gtgtatattagaagacattaaaataagcctc 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
