Query= MSMg01no408_l09.b1 MSMg01no408_l09.b1 CHROMAT_FILE:
MSMg01no408_l09.b1 PHD_FILE: MSMg01no408_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:46 2005
(491 letters)
>mm_chr3_109456113_109457003
Length = 891
Score = 922 bits (477), Expect = 0.0
Identities = 486/489 (99%), Gaps = 2/489 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcctcagacctctcgctgctttccagctgtcacttctgccttccttgtcatta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctcagacctctcgctgctttccagctgtcacttctgccttccttgtcatta 263
Query: 64 tctatactctctgctgtactcctcctggctttgacactgagcctgccaaa-aaactgtga 122
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 tctatactctctgctgtactcctcctggctttgacactgagcctgccaaagaaactgtga 323
Query: 123 tcaaattgggagtctttgctacattttaatatctctgaggacaattttgaaatttttgtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaaattgggagtctttgctacattttaatatctctgaggacaattttgaaatttttgtt 383
Query: 183 actgtggaacttaaaaccaaattaataacagaaatgaatgcttatttttcatgcaactaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgtggaacttaaaaccaaattaataacagaaatgaatgcttatttttcatgcaactaa 443
Query: 243 attttatagctaaaaggtttataatgttagagataagataaatcctaatgtcaccaacca 302
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 444 attttatagctaaaaggtttataatgttagagataagataaatcctaatgtccccaacca 503
Query: 303 catggtttttattaaataatatgggaaggtactggtgaactgtccagacacaagagggta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catggtttttattaaataatatgggaaggtactggtgaactgtccagacacaagagggta 563
Query: 363 gacagatttgtacttacttcttctttttataagtcattcttccaaggatgtaaaaatctg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gacagatttgtacttacttcttctttttataagtcattcttccaaggatgtaaaaatctg 623
Query: 423 ttgaaagtataagcagtttgaataacattattcctaatgactaanacaaatcaagatgcc 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 ttgaaagtataagcagtttgaataacattattcctaatgactaa-acaaatcaagatgcc 682
Query: 483 aagacactg 491
|||||||||
Sbjct: 683 aagacactg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_l09.g1 MSMg01no408_l09.g1 CHROMAT_FILE:
MSMg01no408_l09.g1 PHD_FILE: MSMg01no408_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:46 2005
(458 letters)
>mm_chr3_109638713_109639570
Length = 858
Score = 801 bits (414), Expect = 0.0
Identities = 420/422 (99%)
Strand = Plus / Minus
Query: 1 tctttagcctggacttgacaaagtgctgggggagggaaaatactgagtagagatgtcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctttagcctggacttgacaaagtgctgggggagggaaaatactgagtagagatgtcagg 363
Query: 61 agaggaagacatctgacccacccaagggacaatataatcatggaaatgtgctttatgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agaggaagacatctgacccacccaagggacaatataatcatggaaatgtgctttatgtgt 303
Query: 121 ttcaagagcaataaaaaggtgtcttgcaacaagtgaaggaaagggtggaaaaagtcagga 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttcaagagcaataaaaaggcgtcttgcaacaagtgaaggaaagggtggaaaaagtcagga 243
Query: 181 agaagtcaaggattcataaactaaagaaagaagcagtgaactttctaatatgattgaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agaagtcaaggattcataaactaaagaaagaagcagtgaactttctaatatgattgaaat 183
Query: 241 gggaagccaattggatgttaaggagtgaggcaccctgggctaatctaagtttctattgga 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 182 gggaagccaattggatgttaaggagtgaggcaccctgggctaatctgagtttctattgga 123
Query: 301 tcattctcactgccaggaaatgcagcttagagatgatgacaacaatgtcagtgaagtgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tcattctcactgccaggaaatgcagcttagagatgatgacaacaatgtcagtgaagtgtg 63
Query: 361 atgttatctgcagctgaggatgagatggcggagatggtgagaagtcacctttgccacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 atgttatctgcagctgaggatgagatggcggagatggtgagaagtcacctttgccacaga 3
Query: 421 ta 422
||
Sbjct: 2 ta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
