BAC Information

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BAC

Clone NameMSMg01-408P05
Chromosome3 (Build37)
Map Location 66,414,631 - 66,617,171
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408P05.T7 (MSMg01no408_p05.b1)MSMg01-408P05.TJ (MSMg01no408_p05.g1)
ACCAG506550AG506551
length764812
length of high quality
(start - end)		455 (47 - 501)211 (77 - 287)
definitionCHROMAT_FILE: MSMg01no408_p05.b1 PHD_FILE: MSMg01no408_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:07 2005CHROMAT_FILE: MSMg01no408_p05.g1 PHD_FILE: MSMg01no408_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,414,631 - 66,415,081)(66,616,965 - 66,617,171)
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCATCCCACTTGAGTCCACCTGAGATGCATCCTGCAGAGTAGG
GTCCACCTAGGACACAGCCTGCAGAGTGGGGTCTGGCTGAGGCATAACCC
CCAGAGTAGCATAACCTGATCTCAATTGCCTGGTCCATAGCCCCACCCCC
CACCCCACTGCTTCTAGGGAAGTCTTTCTGCCATCAGGATGATCCTGCCA
ACACCAGGAAAAACCTAAAATCTTTGGATGCCTAAAGAACAGTGCAAGAA
TAAAATCAATAAGACCCAGGGCAATATGGCACCACCAGAGCCCAGTTATC
CTGCTACAACAAAACCTGTATATCTTAAAGAAACTGAAGCATAATAAGGA
TCTTAAATCCAATCTTATAAAGACAATAGAGGCCTTTAAAAAGGACATGA
ACAAATCCCTTAAGGAAATACAGAAAAATGCATTCTAAGAGGTAGGAGAC
ACTAATTAAGATAGCACATAAATATCAAGAAATAAAGGAAAATACTATCA
AACAGGTGAAGATATAAAGAAATTTGCCCCAGATATGAAAAGGTATAATA
TAATCCTTTCAGGAAACACCAATGGAGGAAATCCTTGGATTCGTAAAACC
TACGTAAAGACAACTAGAACCCTCCGATCCTATCTCACTATGGCACCGAT
ATTTTAAAACAAAAATTCCCCCCGTTTTAACCCCATTTTCTATACTAATT
TCCCTCACCTCCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTGGGCGAAACGTTTTAGTAC
TTAACTTTCATTTAATTCAAAATTACATATGGTTAGAGTTGCAGAAAAAC
ATTAGAAAATCATAACCAGCTATCACAACACCACATGTTCAATGAATGCA
GTACAGACCCACTCATGGGCACCTCAAGGTGCCTAATAATAAAAAAGACA
AATCCTAACCGGGTATTGGTGTTTTTTTTTTTTGTTCTGTTTTTTTTTTT
TTTNNTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTT
TTTTTTTTTTTTCTTTTCCTCCTCTTTTTTCTCCTTTTTTTTTCTCCTTC
TTTTCCTTCTCTTTCCTCCCCCCCCCCCCTCTCCCTTTTTCTTTTTCTCT
CCTTTTTTTTTCCTTTTCTTCTCTTTCTCTTCCTTTTTCTATTCTTTTTC
TCTCCCTTCTTCCTTCCTTTCTTCCTTTTTTCCATTTCTTTACATTTTCT
ATTTTTTTTCCTTTTTTCTCTCCTTTTTTTCCCCCTCTCACCCTTTTTCT
ATCTCTTCTCCCTTTTTTCTTTTTTCTTATTATTCATTCTTTCCTCTTTT
CATCATCTTTTTTTCTCCCCCCTTTTTCCTCCACCATCCACCCTCTTACA
CATTTTATTATTTTTTTTTCCCCCTCTTTTTTCTTATCCCTATTTCACTC
TCTCTTTTACCACCTATTTATACCTATCTAATATCTCTCTCCCTCTTTAC
CCTTCACATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_p05.b1 MSMg01no408_p05.b1 CHROMAT_FILE:
MSMg01no408_p05.b1 PHD_FILE: MSMg01no408_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:07 2005
         (455 letters)



>mm_chr3_66414427_66415281
          Length = 855

 Score =  841 bits (435), Expect = 0.0
 Identities = 447/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccatcccacttgagtccacctgagatgcatcctgcagagtagggtccacctag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcaccatcccacttgagtccacctgagatgcatcctgcagagtagggtccacccag 264

                                                                       
Query: 65  gacacagcctgcagagtggggtctggctgaggcataacccccagagtagcataacctgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacacagcctgcagagtggggtctggctgaggcataacccccagagtagcataacctgat 324

                                                                       
Query: 125 ctcaattgcctggtccatagccccaccccccaccccactgcttctagggaagtctttctg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ctcaattgcctggtccatagccccaccccccaccccactgcttctagggaagtccttctg 384

                                                                       
Query: 185 ccatcaggatgatcctgccaacaccaggaaaaacctaaaatctttggatgcctaaagaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatcaggatgatcctgccaacaccaggaaaaacctaaaatctttggatgcctaaagaac 444

                                                                       
Query: 245 agtgcaagaataaaatcaataagacccagggcaatatggcaccaccagagcccagttatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgcaagaataaaatcaataagacccagggcaatatggcaccaccagagcccagttatc 504

                                                                       
Query: 305 ctgctacaacaaaacctgtatatcttaaagaaactgaagcataataaggatcttaaatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgctacaacaaaacctgtatatcttaaagaaactgaagcataataaggatcttaaatcc 564

                                                                       
Query: 365 aatcttataaagacaatagaggcctttaaaaaggacatgaacaaatcccttaaggaaata 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 aatcttataaagacaatagaggcctttaaagaggacatgaacaaatcccttaaggaaata 624

                                          
Query: 425 cagaaaaatgcattctaagaggtaggagaca 455
           ||||||||||||||| |||||||||||||||
Sbjct: 625 cagaaaaatgcattcaaagaggtaggagaca 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_p05.g1 MSMg01no408_p05.g1 CHROMAT_FILE:
MSMg01no408_p05.g1 PHD_FILE: MSMg01no408_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:07 2005
         (211 letters)



>mm_chr3_66616765_66617375
          Length = 611

 Score =  400 bits (207), Expect = e-116
 Identities = 207/207 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttgggcgaaacgttttagtacttaactttcatttaattcaaaattacatatggttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cctttgggcgaaacgttttagtacttaactttcatttaattcaaaattacatatggttag 348

                                                                       
Query: 61  agttgcagaaaaacattagaaaatcataaccagctatcacaacaccacatgttcaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agttgcagaaaaacattagaaaatcataaccagctatcacaacaccacatgttcaatgaa 288

                                                                       
Query: 121 tgcagtacagacccactcatgggcacctcaaggtgcctaataataaaaaagacaaatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgcagtacagacccactcatgggcacctcaaggtgcctaataataaaaaagacaaatcct 228

                                      
Query: 181 aaccgggtattggtgtttttttttttt 207
           |||||||||||||||||||||||||||
Sbjct: 227 aaccgggtattggtgtttttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space:   121604
Effective search space used:   121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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