Query= MSMg01no409_i02.b1 MSMg01no409_i02.b1 CHROMAT_FILE:
MSMg01no409_i02.b1 PHD_FILE: MSMg01no409_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:53 2005
(456 letters)
>mm_chr3_148433997_148434852
Length = 856
Score = 785 bits (406), Expect = 0.0
Identities = 430/442 (97%), Gaps = 8/442 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaaaatagt-cttacctctcgttgtgaccggttacctaagatactgtgtcaggt 63
|||||| |||||| | |||||||||| ||||| ||||||||||||||| |||||
Sbjct: 211 gaattcgaaaataatccttacctctcattgtg-------acctaagatactgtgccaggt 263
Query: 64 gtggtgatgtttaataaatgtctgtttcctaagaatcaagtcgttccttctatgcccaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtggtgatgtttaataaatgtctgtttcctaagaatcaagtcgttccttctatgcccaaa 323
Query: 124 gttaatatgtatcatgtcccatttgtaaatattaaccattattcatggcaggcatcaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttaatatgtatcatgtcccatttgtaaatattaaccattattcatggcaggcatcaagt 383
Query: 184 ttcagcgaaagggagctgtctggatggagcaagaccactatttattaaaagcaggctttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcagcgaaagggagctgtctggatggagcaagaccactatttattaaaagcaggctttg 443
Query: 244 aggacaaagcagacatgatgagatggatgcatacctgctgctattttgtatctgttacat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggacaaagcagacatgatgagatggatgcatacctgctgctattttgtatctgttacat 503
Query: 304 agcttttagactggcggttatgctttgaataatctactggcattttcttgcaataatgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agcttttagactggcggttatgctttgaataatctactggcattttcttgcaataatgat 563
Query: 364 cacattgtattctgtatagttaactcagataattgaaggtcttgtcctacacacacacac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacattgtattctgtatagttaactcagataattgaaggtcttgtcctacacacacacac 623
Query: 424 acacacacacacacacacacac 445
||||||||||||||||||||||
Sbjct: 624 acacacacacacacacacacac 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_i02.g1 MSMg01no409_i02.g1 CHROMAT_FILE:
MSMg01no409_i02.g1 PHD_FILE: MSMg01no409_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:53 2005
(533 letters)
>mm_chr3_148610262_148611202
Length = 941
Score = 977 bits (505), Expect = 0.0
Identities = 529/541 (97%), Gaps = 8/541 (1%)
Strand = Plus / Minus
Query: 1 cctatcttcgctccaggaagcacaaacaacatttataatctcttcttatcggcatggggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctatcttcgctccaggaagcacaaacaacatttataatctcttcttatcggcatggggc 682
Query: 61 tctcctgactttgactttcatgtctgccatgattcttgctttgagagcttatttttctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcctgactttgactttcatgtctgccatgattcttgctttgagagcttatttttctta 622
Query: 121 aaagcatctccctgcttttattctgagtgtgaacgcaacacatcttcgtgagaaaagata 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 aaagcatctccctgcttttattctgagtgtgaatgcaacacatcttcgtgagaaaagata 562
Query: 181 attaaaaggaatcatgataacaatgtaacattgttcacgcattgggcttttcatagtatt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 attaaaaggaatcatgataacaatgtaacattgttcacgctttgggcttttcatagtatt 502
Query: 241 ttctttacacacatctttttttt---cccctacaatgtacatatagtgatctcgtagata 297
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctttacacacatcttttttttttccccctacaatgtacatatagtgatctcgtagata 442
Query: 298 aataaaaaatcacgtatgaaataaattcatttacatccattattgtgataatggctttaa 357
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaaaaatcatgtatgaaataaattcatttacatccattattgtgataatggctttaa 382
Query: 358 ataggtgttataaaattcatcttgtatatatttaaaaaggtttacctacaacctttaacc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataggtgttataaaattcatcttgtatatatttaaaaaggtttacctacaacctttaacc 322
Query: 418 ttcacttaccagacacttgtaatttcttttgtttaggtattaactagataag-----tga 472
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 321 ttcacttaccagacacttgtaatttcttttgtttaggtattaactagataagtaacttta 262
Query: 473 taggaaatatttcttgcgtggtgagttgtttcctgaggctgggattctagattctgatga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggaaatatttcttgcgtggtgagttgtttcctgaggctgggattctagattctgatga 202
Query: 533 g 533
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 941
Length adjustment: 10
Effective length of query: 523
Effective length of database: 931
Effective search space: 486913
Effective search space used: 486913
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
