Query= MSMg01no409_l05.b1 MSMg01no409_l05.b1 CHROMAT_FILE:
MSMg01no409_l05.b1 PHD_FILE: MSMg01no409_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:09 2005
(455 letters)
>mm_chr3_140914466_140915320
Length = 855
Score = 874 bits (452), Expect = 0.0
Identities = 452/452 (100%)
Strand = Plus / Minus
Query: 4 ggaattcagtgacagctctattctaagaacacccaaataatggattgtttcccttttctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggaattcagtgacagctctattctaagaacacccaaataatggattgtttcccttttctc 596
Query: 64 tttttcagttttcgtttcttaaaaagtaaagcaaacatgaaaagaaactttttcattaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttttcagttttcgtttcttaaaaagtaaagcaaacatgaaaagaaactttttcattaaa 536
Query: 124 ttattgctaacacaagtaaagattacgaactgtaaatcaatttaaagagttgttattatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttattgctaacacaagtaaagattacgaactgtaaatcaatttaaagagttgttattatc 476
Query: 184 aagaaatataatatatcattttatttggctaaaatgacagacattgtatttttaacatgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aagaaatataatatatcattttatttggctaaaatgacagacattgtatttttaacatgg 416
Query: 244 attttttttcaagtttagaaattccatggactgttatctaatcattgaccacattatcaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attttttttcaagtttagaaattccatggactgttatctaatcattgaccacattatcaa 356
Query: 304 accatatataaagtatctcagaaaactgagcatggtaaagaaagtgatattttcctaata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 accatatataaagtatctcagaaaactgagcatggtaaagaaagtgatattttcctaata 296
Query: 364 agttttaaaaatttgttcccataatatagctgtgcatgtttaatttggggatgaattaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agttttaaaaatttgttcccataatatagctgtgcatgtttaatttggggatgaattaag 236
Query: 424 tcttgttgcgggtgccagatggacagaagggg 455
||||||||||||||||||||||||||||||||
Sbjct: 235 tcttgttgcgggtgccagatggacagaagggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_l05.g1 MSMg01no409_l05.g1 CHROMAT_FILE:
MSMg01no409_l05.g1 PHD_FILE: MSMg01no409_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:09 2005
(504 letters)
>mm_chr3_140758157_140759057
Length = 901
Score = 928 bits (480), Expect = 0.0
Identities = 497/504 (98%), Gaps = 3/504 (0%)
Strand = Plus / Plus
Query: 1 aaactatagtctctccagtctttataatgtaaagtaaaaaccaaataaaattaaattaaa 60
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aaactatagtctctccagtcttgataatgtgaagtaaaaaccaaataaaattaaattaaa 260
Query: 61 aaaagagaaaacaagtttagactcatcatgttatttttatatttcctttcctgtgtccca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aaaagagaaaacaagtttagactcat---gttatttttatatttcctttcctgtgtccca 317
Query: 121 atgtcaccaatttgaataaaagttctagtcttctaaatattttcattgattattcttaac 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atgtcaccaatttgcataaaagttctagtcttctaaatattttcattgattattcttaac 377
Query: 181 accagactttaaaatatggtaaaaaatatatctttagagattttctaagttcacagaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 accagactttaaaatatggtaaaaaatatatctttagagattttctaagttcacagaaat 437
Query: 241 tatttatatatctttattttactgcatagccttgcgtgagctaactacttttccaaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tatttatatatctttattttactgcatagccttgcgtgagctaactacttttccaaaaga 497
Query: 301 gtgtgcatgcttctttctcaagcaccacagtgcctcttataaacaacacagggaaatttc 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtgtgtatgcttctttctcaagcaccacagtgcctcttataaacaacacagggaaatttc 557
Query: 361 aggattcttttctgagacataagattatttttatgctggtagtctacatgtcagtaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggattcttttctgagacataagattatttttatgctggtagtctacatgtcagtaatta 617
Query: 421 ctaaacaaattctgtcttttcttcatgtgtaagaaagaaattcatagagaattttgcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctaaacaaattctgtcttttcttcatgtgtaagaaagaaattcatagagaattttgcaaa 677
Query: 481 atctttttaatgttcttcacctat 504
||||||||||||||||||||||||
Sbjct: 678 atctttttaatgttcttcacctat 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 901
Length adjustment: 10
Effective length of query: 494
Effective length of database: 891
Effective search space: 440154
Effective search space used: 440154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
