BAC Information

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BAC

Clone NameMSMg01-409L08
Chromosome3 (Build37)
Map Location 17,512,872 - 17,513,120
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409L08.T7 (MSMg01no409_l08.b1)MSMg01-409L08.TJ (MSMg01no409_l08.g1)
ACCAG507129AG507130
length839763
length of high quality
(start - end)
136 (51 - 186)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no409_l08.b1 PHD_FILE: MSMg01no409_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:10 2005CHROMAT_FILE: MSMg01no409_l08.g1 PHD_FILE: MSMg01no409_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGAGGA
TCCGCGGAATTCCCCTTATTCCCATAGCCCCTCTGGCTATCTATCCCTTG
CTTCAGGGAAGATGAGCGGGGGTGAGAGCCCTGGGATGTATGCTTGTTAT
AGTGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTAGGTGCATAGTGTG
CGCCCCCCACTTTCTCCATGTCATCCTATGTTTTTGCTGTATCGCTCGCA
TGACTATCTCCTCATATTCGTCTTGCCGCTCTTCCCCACATTATGCTGTG
TTATTCCTCTGCCGCTTCCTTCCCCTCTTTTTTTTTTTGTTCTCTTGCCT
TTGCTTTCTTTTTTTTTCTCTTCCCTCTCCTTTTTTTCTTTTCCGTCTTT
ATTTACCTTCTTTTACCTTTGTTTCCCCCTTTTTTTTTTTCCTTTTTTCT
CCTCCCCTTTCTTTTTTTTTACCTCTTTTTTCCTTTTTTCCTCTTCTCTT
CCCCTCCTCTTCCTTTCCTTCTTTCCCCTTTTCTTTTCTCTTCCTTCTCT
CCCTCCCTTTCCTTCTCTCTTTCCTCTCTTTCTCCCTCCCTCCTTTTTCT
CCTCCTACTCTTTTTCACACTTCCTTATTCCCTCTCGTTCCTCTTTTTTC
CTTTATCTTTCCTCCCACCTTTCCCTCCTTTTTTCCTTTCTCCCTCCCTC
TCCCTTTCCCTCTCCCTTCTTATTCCACCTGCCTTTTTTCCTCTTCCTCT
TCTCCTCCATTTTCTTTCTTCCCTTTTTCTTAACTACACCTTTTTTTATT
CTTCTTCTCCTTATTTTCCTTTTCTCTTTCTTCCCCTCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTACAGACATTCACTACACAGAATCAGCACAG
AACTATTCATGGAAATATGCAGAGATCCAGTCTATGAAATGTCTTTCCTG
TGTCAGAGGATATGATTCACTCTGGTTTGGTGTCCTATTTGTATGTTCTT
GTCTGCCAGATCTCTTCAGCACAATGAATCTTGAGTTTAAAAAAAATCTA
TATTTATTTATTTATTTATTATATTTGTGACAAAGCATGTTGTCAGTTGC
TCTCTCCTTGTACTATTTCTTACTCAGCTCATTAAGGCCTGAGAGGAAGT
GACTTGACCCACTGAGCTATCTTCATGGGTCATGAATCTAGATTTTGTTT
TATAAGACACATACTCTTAGAACATTATGCTTTTCTTTTCCTTATTCAAA
TTCTTTTGGCTTGTTTGGGACTTCCTTGTATGTATGAATATGTTTATTAT
TATTTTCCTTGTTTTTTCCTTTTCTGCTCCTTTTCTTCTCTTTTCTTATT
TATTATTTAATCTTATTCTTTTTATTTTCCTCCATTTTTATTATTTTTCC
TTTCTATTTTTTTACATATCTATTCCATTTCTACACACTCCTTTCCTCAC
CCTTCTTTTTCTTTTTTTTTTCTTCTTTTCGTTTCTCTTCCCTTTTTCAT
TTTTTCTATTTTATTCTTTTTTCCCTCTTCATATATTCCTTACATATCTT
TTCTTTTGCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_l08.g1 MSMg01no409_l08.g1 CHROMAT_FILE:
MSMg01no409_l08.g1 PHD_FILE: MSMg01no409_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:10 2005
         (247 letters)



>mm_chr3_17512742_17513388
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 247/249 (99%), Gaps = 2/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actacagacattcactacacagaatcagcacagaactattcatggaaatatgcagagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 actacagacattcactacacagaatcagcacagaactattcatggaaatatgcagagatc 320

                                                                       
Query: 61  cagtctatgaaatgtctttcctgtgtcagaggatatgattcactctggtttggtgtccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagtctatgaaatgtctttcctgtgtcagaggatatgattcactctggtttggtgtccta 260

                                                                       
Query: 121 tttgtatgttcttgtctgccagatctcttcagcacaatgaatcttgagttt--aaaaaaa 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 259 tttgtatgttcttgtctgccagatctcttcagcacaatgaatcttgagtttaaaaaaaaa 200

                                                                       
Query: 179 atctatatttatttatttatttattatatttgtgacaaagcatgttgtcagttgctctct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atctatatttatttatttatttattatatttgtgacaaagcatgttgtcagttgctctct 140

                    
Query: 239 ccttgtact 247
           |||||||||
Sbjct: 139 ccttgtact 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)