Query= MSMg01no409_m23.b1 MSMg01no409_m23.b1 CHROMAT_FILE:
MSMg01no409_m23.b1 PHD_FILE: MSMg01no409_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:18 2005
(467 letters)
>mm_chr3_39127044_39127909
Length = 866
Score = 872 bits (451), Expect = 0.0
Identities = 460/463 (99%), Gaps = 1/463 (0%)
Strand = Plus / Plus
Query: 5 gaattctttaaaaactcatgggataacttttccacaaaccaagttatttttgtctccatt 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaaaactcatgggagaacttttccacaaaccaagttatttttgtctccatt 264
Query: 65 aatagaatactaacaaattgaacacaaacaaatgtagcttgattgacttactagagagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatagaatactaacaaattgaacacaaacaaatgtagcttgattgacttactagagagcc 324
Query: 125 ctttaccaccttaatgatttttggctcaggcatgatccctaatttttagccaaattggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttaccaccttaatgatttttggctcaggcatgatccctaatttttagccaaattggct 384
Query: 185 ctagttatttcagaagaatttgaaaaattggaaaaaacaaagtgtgcacatgaaatacta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagttatttcagaagaatttgaaaaattggaaaaaacaaagtgtgcacatgaaatacta 444
Query: 245 tgtacataagaggtaatttgaggttgtttcccacttagttattaagcagtagcctgtctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtacataagaggtaatttgaggttgtttcccacttagttattaagcagtagcctgtctt 504
Query: 305 agcacatgcatagcataccaggctgggccacatgctctttctcatggtcacctgctctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcacatgcatagcataccaggctgggccacatgctctttctcatggtcacctgctctct 564
Query: 365 acatccaagggagctgaactggtggggtatggctgcacagaactccaatggggagggtgg 424
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 565 acatccaagggagctgaactggtggggtatgactgcacagaactccaatggggagg-tgg 623
Query: 425 ggggtgcattattgggcactcagtttctcttattttctgagag 467
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggggtgcattattgggcactcagtttctcttattttctgagag 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 866
Length adjustment: 10
Effective length of query: 457
Effective length of database: 856
Effective search space: 391192
Effective search space used: 391192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_m23.g1 MSMg01no409_m23.g1 CHROMAT_FILE:
MSMg01no409_m23.g1 PHD_FILE: MSMg01no409_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:18 2005
(471 letters)
>mm_chr3_39183322_39184193
Length = 872
Score = 727 bits (376), Expect = 0.0
Identities = 411/428 (96%), Gaps = 12/428 (2%)
Strand = Plus / Minus
Query: 46 tagactccccttagaatttttgcacaattcttagattaagaggcacatgaggcacatgag 105
|||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 872 tagactccccttagaatttttgcacaattcttagattaagag------ga---acatgag 822
Query: 106 ggccacaagcagaacagaattcataacagcacgaagggctcaggacacttggcacttggg 165
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 821 ggccacaagcagaacagaattcataacagcacgaagtgctcaggacacttggcacttggg 762
Query: 166 ccatgcctctcctgggaacagccatagtggctgtgctatctgatggggacacgttccatg 225
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ccatgcctctcctgggcacagccatagtggctgtgctatctgatggggacacgttccatg 702
Query: 226 aattttaaagcctcgcatgactctcggcatcaggtgacccctgcctcatattctcctgtg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aattttaaagcctcgcatgactctcggcatcaggtgacccctgcctcatattctcctgtg 642
Query: 286 atttcttgaagctcatcaaagcaaggtccacaaagagaaagatgtatacattctccatct 345
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 641 atttcttgaagctcatcaaagtaagctccacaaagagaaagatgtatacattctccatct 582
Query: 346 ttctctagaacatgtgagtttgtcaaacttcactgagaagcagaaagtctgagttataaa 405
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttctctagaacatgtgagtttgt-aaacttcactgagaagcagaaagtctgagttataaa 523
Query: 406 gctgtaagacttaatgatgtaaactctagcaagacttttaaatt--agagtgcacacgaa 463
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 522 gctgtaagacttaatgatgtaaactctagcaagacttttaaattacagactgcacacgaa 463
Query: 464 agtatttc 471
||||||||
Sbjct: 462 agtatttc 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space: 397382
Effective search space used: 397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
