NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCTCAAATGTTAACTATCTTTATCTAGCAGAATCACATCC
AGACCAGACAGCTGCTGTGGACAATCTGAAGTGACCCATATCCAACCCCT
GGGATTCAAACAAAAAACTTATTACATAACAACTGCATTTCCAAAGAGAC
CGAAGTTCCCACTATACACTGTAAACCTCCCCAAACAGTGTCACCGACTG
TCAAGTTTCTGAGCCTATGGGGCAATGTTTCTCATTCAACTCAGCATACA
GGGTAACTTGAATCTGTGTTCCTGGGCCATGGCCACCCGTATTTGGTTCA
GAAGGCTGTGCTTTGTATCTATCTGACTCACCCACCTTCTACAGGTCCTG
GTTCCAAACAAATGGAAGACTAGGTCAACATATGACTGGGAGATAAACAC
TGATTCTATAGAAGGTTGGAAGCAACAGATCTGGATAGAGAACAAGTGCT
TGATCTGCACTGCTTTGAGCCTGTAACCTACAGTTTGTGTAAAGTATGCT
TCCCTCTCTTTTGGAGNTATATTTTCTTCTTTGAGCAGTAACTTTGACTG
CATTTCATCTCAGCCCATCATCTGAGTCCCCACTTTTCTTGATATTTTTA
AGNATCTTATGTTCTTTTTTTTTTTTTTTAACCCAGTTTTGCTGGGATTA
AAGGATCTTAATTTCCTTACCCTCATAAATTGAGGAAGG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCCTCAGGATGGACTCGTCTGTNGCATGGTGA
ACTGCAGCTTCTGATCTCAGTTTGTTGGCCAAGGAAAGGGGAAACATCTT
TGNNTGGGGGNTTNGNTTTTTTTTTTTTTTTTGTTTNNGNTTNGNNTTTG
NNTTTTAAAGGGGAAAAAAAATTTAATTTTTTTCCTTTGGAAGAAGGGGC
CCCCCTTTTAAATTGGAAAAAACCCGGGGGGTATTTCCCTCCTTTCTCAA
ATTTAAAGAAAAAACCCCTTTAAGACACCCCCGGCTTTTTTTTTTAAAAA
AAAAAGAGGGTTTAAGGGGGGGGGCGGTTTNTTTCTTTTTTACCTTCTTC
ATTCCACNCAACNACTTCCCCCCCTATCCTCTATCCCCCCTTTTCCCCTC
ACATACACNCAACCCATACTCCTACTATCTCATNTCATCTACCCACACTC
AACCTTCTTCCTATTNTCCCTTTCACCTCCTTTCCATAAACTCCCACCCT
ACATTATTCCTCNNCTACCCGGTTTTCCCCCCCCCTTTTTCCTCGTCCTC
TTTTTCCTCCCTTCCCCTTTCTTCTCCTTTTCGCTATTCCCCTTTATCTT
CTCCTCTTTTTTCTTTTTTCTCCCNCCCCACTTTTCGTTTTCCTTTATCC
CCCGTACTCGGCTTTCATTTCTCCGTCCCTTCTTTCNTTCTTATCCCTCT
ACTTCTCCTTCATTTCATTTACACATTTTCTTACCTCAACCAACCCAAGT
NNCCCTTATCCACACATACACTACCACTATTCCTCTCCTCCTTATTACGT
TTCCCTTCTCTTCTTTTCTTCCTCCCTCTTTCTTTTCNNCCCTCCCTTCT
CTTCCCTTTTTTTCACCTTTTCTTTCTCTTTCGCGGGATGATGTGTGTG

Query= MSMg01no410_f04.b1 MSMg01no410_f04.b1 CHROMAT_FILE:
MSMg01no410_f04.b1 PHD_FILE: MSMg01no410_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:01 2005
         (593 letters)



>mm_chr3_135650138_135651130
          Length = 993

 Score = 1079 bits (558), Expect = 0.0
 Identities = 578/585 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctcaaatgttaactatctttatctagcagaatcacatccagaccagacagctgct 68
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctcaaatgtaaactatctttatctagcagaatcacatccagaccagacagctgct 268

                                                                       
Query: 69  gtggacaatctgaagtgacccatatccaacccctgggattcaaacaaaaaacttattaca 128
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 269 gtggacaatctgaagtgacccatatccaacccctgggattcaaacaaaaaacatatcaca 328

                                                                       
Query: 129 taacaactgcatttccaaagagaccgaagttcccactatacactgtaaacctccccaaac 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taacaactgcatttccaaagagaccgaagttcccactatacactgtaaacctccccaaac 388

                                                                       
Query: 189 agtgtcaccgactgtcaagtttctgagcctatggggcaatgtttctcattcaactcagca 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agtgtcaccgactgtcaagtttctgagcctatggggcaatgtttctcattcaactcagca 448

                                                                       
Query: 249 tacagggtaacttgaatctgtgttcctgggccatggccacccgtatttggttcagaaggc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tacagggtaacttgaatctgtgttcctgggccatggccacccgtatttggttcagaaggc 508

                                                                       
Query: 309 tgtgctttgtatctatctgactcacccaccttctacaggtcctggttccaaacaaatgga 368
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 509 tgtgctttgtatctatctgactcacccaccttctacaggtcctgggtccaaacaaatgga 568

                                                                       
Query: 369 agactaggtcaacatatgactgggagataaacactgattctatagaaggttggaagcaac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agactaggtcaacatatgactgggagataaacactgattctatagaaggttggaagcaac 628

                                                                       
Query: 429 agatctggatagagaacaagtgcttgatctgcactgctttgagcctgtaacctacagttt 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agatctggatagagaacaagtgcttgatctgcactgctttgagcctgtaacctacagttt 688

                                                                       
Query: 489 gtgtaaagtatgcttccctctcttttggagntatattttcttctttgagcagtaactttg 548
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 689 gtgtaaagtatgcttccctctcttttggagttatattttcttccttgagcagtaaatttg 748

                                                        
Query: 549 actgcatttcatctcagcccatcatctgagtccccacttttcttg 593
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 actgcatttcatctcagcccatcatctgagtccccacttttcttg 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)